Job Description P76524 Confidence 100.00% Date Thu Jan 5 12:24:02 GMT 2012 Rank 9 Aligned Residues 347 % Identity 19% Template c3cb5A_ PDB info PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of the s. pombe peptidase homology domain of fact2 complex subunit spt16 (form a) Resolution 2.05 Å

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		3	.	.	.	.	.	.	10	.	.	.									.	.	.	.	.	.	20	.	.	.	.	.	.													.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure													.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query SS confidence													.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.																																				.
Query Sequence		L	L	A	S	L	R	D	W	L	K	A	.	.	.	.	.	.	.	.	Q	Q	L	D	A	V	L	L	S	S	R	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	P	H	L	G	I	S	T	G	S	G	Y	V	V	I	S	R	E	S	A	H	I	L	V	D	S	R	Y	Y	V	E	V	E	A	.
Query Conservation													.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.																																				.
Alig confidence													.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation
Template Sequence		R	L	G	I	L	L	T	S	W	K	N	E	E	D	G	K	T	L	F	Q	D	C	D	S	I	L	V	T	V	G	A	H	D	D	T	N	P	Y	Q	K	S	T	A	L	H	T	W	L	L	G	Y	E	F	P	S	T	L	I	L	L	E	K	H	R	I	T	I	L	T	S	V	N	K	A	N	X	L	T	K	L
Template Known Secondary structure												S							T	S	T	T		S								S			T	T															S	S			S	S							S	S															G	G	G
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
					62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.						.	.	.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure		.	.	.																										.	.	.	.	.																.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																										.	.	.	.	.																.	.	.	.	.	.	.	.
Query Sequence		.	.	.	R	A	Q	G	Y	Q	L	H	L	L	D	A	T	N	T	L	T	T	I	V	N	Q	I	I	A	.	.	.	.	.	D	E	Q	L	Q	T	L	G	F	E	G	Q	Q	V	S	.	.	.	.	.	.	.	.	W	E	T	A	H	R	W	Q	S	E	L	N	A	K	L	V	S	A	T	P	D	V	L	R
Query Conservation		.	.	.																										.	.	.	.	.																.	.	.	.	.	.	.	.
Alig confidence		.	.	.																										.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	T	K	G	A	A	A	D	V	N	I	L	K	R	T	K	D	A	E	E	N	K	K	L	F	E	K	I	I	E	Y	I	R	A	T	N	K	K	V	G	V	F	P	K	D	K	T	Q	G	K	F	I	N	E	W	D	S	I	F	E	P	V	K	S	E	F	N	L	V	D	A	S	L	G	L	A	K	C	L
Template Known Secondary structure		G	S		T	T		S	S									S																		T	T	T	S						T	T					S											G	G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																							.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	K	T	P	E	E	V	E	K	I	R	L	A	C	G	I	A	D	R	G	A	E	H	I	R	R	F	I	Q	A	G	M	S	E	R	E	I	A	A	E	L	E	W	F	M	R	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	A	E	K	A	S	F	D	T
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	K	D	E	Q	E	L	A	N	I	K	G	A	S	R	V	S	V	A	V	X	S	K	Y	F	V	D	E	L	S	T	Y	I	D	Q	G	K	K	I	T	H	S	K	F	S	D	Q	X	E	S	L	I	D	N	E	A	F	F	Q	T	K	S	L	K	L	G	D	I	D	L	D	Q	L	E	W	C	Y	T	P
Template Known Secondary structure			S																																		T	T				B											G	G	G		T	T	G	G	G		S	S	S			T	T			G	G	G				S	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	A	S	G	W	R	G	A	L	P	H	G	K	A	S	D	K	I	V	A	A	G	E	F	V	T	L	D	F	G	A	L	Y	Q	G	Y	C	S	D	M	T	R	T	L	L	V	N	G	E	G	V	S	A	E	S	H	L	L	F	N	V	Y	Q	I	V	L	Q	A	Q	L	A	A	I	S	A	I	R	P	G
Query Conservation
Alig confidence																																																		.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.
Template Sequence		I	I	Q	S	G	G	S	Y	D	L	K	P	S	A	I	T	D	D	R	N	L	H	G	D	V	V	L	C	S	L	G	F	R	Y	K	S	Y	C	S	N	V	G	R	T	Y	L	F	D	.	.	.	.	.	.	P	D	S	E	Q	Q	K	N	Y	S	F	L	V	A	L	Q	K	K	L	F	E	Y	C	R	D	G
Template Known Secondary structure					B	T	T	B				S	T	T					S	S	B			S	S											T	T												S	.	.	.	.	.	.																									T	T
Template Predicted Secondary structure																																																		.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.							.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.											.	.	.	330
Predicted Secondary structure																				.	.																						.																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.																						.																									.	.	.	.	.	.	.	.	.	.
Query Sequence		V	R	C	Q	Q	V	D	D	A	A	R	R	V	I	T	E	A	G	.	.	Y	G	D	Y	F	G	H	N	T	G	H	A	I	G	I	E	V	H	E	D	P	.	R	F	S	P	R	D	T	T	T	L	Q	P	G	M	L	L	T	V	E	P	G	I	Y	L	.	.	.	.	.	.	.	.	.	.	P	G	Q	G
Query Conservation																				.	.																						.																									.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.																						.																									.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	I	G	D	I	Y	T	K	I	L	G	L	I	R	A	K	R	P	D	L	E	P	N	F	V	R	N	L	G	A	G	I	G	I	E	F	R	E	S	S	L	L	V	N	A	K	N	P	R	V	L	Q	A	G	X	T	L	N	L	S	I	G	F	G	N	L	I	N	P	H	P	K	N	S	Q	S	K	E	Y
Template Known Secondary structure			B																	G	G	G	G	G	G	B		S							S	S	S	S		B	G	G	G			S	T	T				B			T	T															S	S			T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	R	I	E	D	V	V	L	V	T	P	Q	G	A	E	V	L	Y	A	M	P	K	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	L	L	I	D	T	I	Q	I	T	R	S	D	P	I	V	F	T	D	S	P	K	A	Q
Template Known Secondary structure													S	S	S				T	T					S
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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