Job Description P76524 Confidence 100.00% Date Thu Jan 5 12:24:02 GMT 2012 Rank 12 Aligned Residues 348 % Identity 16% Template c3bitA_ PDB info PDB header:transcription Chain: A: PDB Molecule:fact complex subunit spt16; PDBTitle: crystal structure of yeast spt16 n-terminal domain Resolution 1.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.													.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.
Predicted Secondary structure														.	.								.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Query SS confidence														.	.								.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Query Sequence		L	L	A	S	L	R	D	W	L	K	A	Q	.	.	Q	L	D	A	V	L	L	.	.	.	.	.	.	.	.	.	.	.	.	S	S	R	Q	N	K	Q	P	H	L	G	I	S	T	G	S	G	Y	V	V	I	S	R	E	S	A	H	I	L	V	D	S	R	.	.	.	.	.	.	.	Y	Y	V	E	V	E	A
Query Conservation														.	.								.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Alig confidence														.	.								.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	E	L	L	Y	S	K	Y	N	E	F	E	G	S	P	N	S	L	L	F	V	L	G	S	S	N	A	E	N	P	Y	Q	K	T	T	I	L	H	N	W	L	L	S	Y	E	F	P	A	T	L	I	A	L	V	P	G	K	V	I	I	I	T	S	S	A	K	A	K	H	L	Q	K	A	I	D	L	F	K	D
Template Known Secondary structure										G	G	G	S	T	T			S								S			T	T	S	T	T												S	S			S	S							T	T															T	T					T	T	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.								.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.										110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Query Sequence		R	A	Q	G	Y	Q	L	H	L	L	D	A	T	N	.	.	.	.	.	.	.	T	L	T	T	I	V	N	Q	I	I	A	D	E	Q	L	Q	T	L	G	F	E	G	Q	Q	V	S	W	E	T	A	H	R	W	Q	.	.	.	.	.	.	.	.	.	S	E	L	N	A	K	L	V	S	A	T	P	D	V	L	R
Query Conservation																.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	S	K	I	T	L	E	L	W	Q	R	N	N	K	E	P	E	L	N	K	K	L	F	D	D	V	I	A	L	I	N	S	A	G	K	T	V	G	I	P	E	K	D	S	Y	Q	G	K	F	X	T	E	W	N	P	V	W	E	A	A	V	K	E	N	E	F	N	V	I	D	I	S	L	G	L	S	K	V	W
Template Known Secondary structure		T	T		S										T	T																					S						T	T					S																		T														S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.																													.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	K	T	P	E	E	V	E	K	I	R	L	A	C	G	I	A	D	R	G	A	E	H	I	R	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	A	G	M	S	E	R	E	I	A	A	E	L	E	W	F	M	R	Q	Q	G	A	E
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	K	D	V	N	E	Q	A	F	L	S	V	S	S	K	G	S	D	K	F	X	D	L	L	S	N	E	X	V	R	A	V	D	E	E	L	K	I	T	N	A	K	L	S	D	K	I	E	N	K	I	D	D	V	K	F	L	K	Q	L	S	P	D	L	S	A	L	C	P	P	N	Y	K	F	N	F	D	L	L
Template Known Secondary structure			S																																	T	T				B											G	G	G														T	T	S		T	T	S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		K	A	S	F	D	T	I	V	A	S	G	W	R	G	A	L	.	P	H	G	K	A	S	D	K	I	V	A	A	G	E	F	V	T	L	D	F	G	A	L	Y	Q	G	Y	C	S	D	M	T	R	T	L	L	V	N	G	E	G	V	S	A	E	S	H	L	L	F	N	V	Y	Q	I	V	L	Q	A	Q	L	A	A
Query Conservation																		.
Alig confidence																		.																																								.	.	.	.	.
Template Conservation																																																										.	.	.	.	.
Template Sequence		D	W	T	Y	S	P	I	I	Q	S	G	K	K	F	D	L	R	V	S	A	R	S	T	N	D	Q	L	Y	G	N	G	C	I	L	A	S	C	G	I	R	Y	N	N	Y	C	S	N	I	T	R	T	F	L	I	D	P	.	.	.	.	.	S	E	E	X	A	N	N	Y	D	F	L	L	T	L	Q	K	E	I	V
Template Known Secondary structure				S	S							S	S					S	T	T					S	S	B				S												T	T												S		.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.						310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																									.	.																										.	.																											.	.
Query SS confidence																									.	.																										.	.																											.	.
Query Sequence		I	S	A	I	R	P	G	V	R	C	Q	Q	V	D	D	A	A	R	R	V	I	T	E	.	.	A	G	Y	G	D	Y	F	G	H	N	T	G	H	A	I	G	I	E	V	H	E	D	P	R	F	.	.	S	P	R	D	T	T	T	L	Q	P	G	M	L	L	T	V	E	P	G	I	Y	L	P	G	Q	G	.	.
Query Conservation																									.	.																										.	.																											.	.
Alig confidence																									.	.																										.	.																											.	.
Template Conservation
Template Sequence		T	N	I	L	K	P	G	R	T	P	K	E	V	Y	E	S	V	I	E	Y	I	E	K	T	K	P	E	L	V	P	N	F	T	K	N	I	G	S	L	I	G	L	E	F	R	D	S	N	F	I	L	N	V	K	N	D	Y	R	K	I	Q	R	G	D	C	F	N	I	S	F	G	F	N	N	L	K	D	S	Q	S
Template Known Secondary structure				T			T	T																			G	G	G	G	G	G	B		S							S	S	S	S	S		T	T	S	B	S	S	T	T			S					T	T															T	T	T
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
						331	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure		.	.	.	.														.	.	.
Query SS confidence		.	.	.	.														.	.	.
Query Sequence		.	.	.	.	G	V	R	I	E	D	V	V	L	V	T	P	Q	.	.	.	G	A	E	V	L	Y	A	M	P	K	T	V
Query Conservation		.	.	.	.														.	.	.
Alig confidence		.	.	.	.														.	.	.
Template Conservation
Template Sequence		A	N	N	Y	A	L	Q	L	A	D	T	V	Q	I	P	L	D	E	T	E	P	P	R	F	L	T	N	Y	T	K	A	K
Template Known Secondary structure																	S	S	T	T	S					S			S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440