Job Description P05852 Confidence 100.00% Date Thu Jan 5 10:59:01 GMT 2012 Rank 4 Aligned Residues 278 % Identity 24% Template c3tsuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:transcriptional regulatory protein; PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate Resolution 1.92 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	G	I	E	T	S	C	D	E	T	G	I	A	I	Y	D	D	E	K	G	L	L	A	N	Q	L	Y	S	Q	V	K	L	H	A	D	Y	G	G	V	V	P	E	L	A	S	R	D	H	V	R	K	T	V	P	L	I	Q	A	A	L	K	E	S	G	L	T	A	K	D	I	D	A	V	A	Y	T	A	G	P
Query Conservation
Alig confidence							.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation							.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		V	L	C	L	G	.	A	D	L	K	N	T	F	C	L	V	R	G	E	Q	V	V	L	S	Q	H	L	G	D	L	S	D	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	T	Q	W	R	E	A	L	R	L	M	Q	N	I	Y	N	F	T	P	.	.	.	Q	Y	V	V	H	D	A	H	P
Template Known Secondary structure							.		S	S	S	B								T									B		T	T	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	T				.	.	.	S						S		T
Template Predicted Secondary structure							.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		394	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.															.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.				.	.	.	450	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																								.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		G	L	V	G	A	L	L	V	G	A	T	V	G	R	S	L	A	F	A	W	D	V	P	A	I	P	V	H	H	M	E	G	H	L	L	A	P	M	.	.	.	.	L	E	D	N	P	P	E	F	P	F	V	A	L	L	V	S	G	G	H	.	.	.	.	.	.	.	T	Q	L	I	S	V	T	G	I	G	Q	Y
Query Conservation																																								.	.	.	.																				.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.																									.	.	.	.																				.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	V	S	C	.	.	.	.	.	.	.	.	.	Q	W	A	S	E	M	N	L	P	T	Q	T	V	L	H	H	H	A	H	A	A	A	C	L	A	E	H	Q	W	P	L	D	G	G	D	V	I	A	L	T	L	D	G	I	G	M	G	E	N	G	A	L	W	G	G	E	C	L	R	V	N	Y	R	E	C	E
Template Known Secondary structure		T					.	.	.	.	.	.	.	.	.					T	S		S																			T	T			T	T																G	G	G												S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.
Template SS confidence
		456	.	.	.	460										.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		152	.																																																										.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	E	S	I	D	D	A	A	G	E	A	F	D	K	T	A	K	L	L	G
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	L	G	G	L	P	A	V	A	L	P	G	G	D	L	A	A	K	Q	P	W	R	N	L	L	A	Q	C	L	R	F	V	P	E	W	Q	N	Y	P	E	T	A	S	V	A	A	A	N	W	S	V	L	A	R	A	I	E	R	G	I	N	A	P	L	A	S	S	C	G	R	L	F	D	A	V	A	A	A	L	G
Template Known Secondary structure						S						T	T	G	G	G	G	G	T		T													T	T	G	G	G	S	G	G	G					T	S		T										T	S	S																			T
Template Predicted Secondary structure
Template SS confidence
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
		175						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.
Query SS confidence			.	.	.	.	.
Query Sequence		L	.	.	.	.	.	D	Y	P	G	G	P	L	L	S	K	M	A	A	Q	G	T	A	G	R	F	V	F	P	R	P	M	T	D	R	P	G	L	D	F	S	F	S	G	L	K	T	F	A	A	N	T	I	R	D	N	G	T	D	D	Q	T	R	A	D	I	A	R	A	F	E	D	A	V	V	D	T	L	M	I
Query Conservation			.	.	.	.	.
Alig confidence			.	.	.	.	.																																.														.	.	.	.	.	.	.
Template Conservation																																							.														.	.	.	.	.	.	.
Template Sequence		C	A	P	A	T	L	S	Y	E	G	E	A	A	C	A	L	E	A	L	A	A	S	C	D	G	V	T	H	P	V	T	M	P	R	V	D	N	.	Q	L	D	L	A	T	F	W	Q	Q	W	L	N	.	.	.	.	.	.	.	W	Q	A	P	V	N	Q	R	A	W	A	F	H	D	A	L	A	Q	G	F	A	A
Template Known Secondary structure			S		S	S		S	S	T	T												T	S													T	T	.														.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.														.	.	.	.	.	.	.
Template SS confidence
		607	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.		.	.	.	.	.	.	650	.	.	.	.	.	.								.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		K	C	K	R	A	L	D	Q	T	G	F	K	R	L	V	M	A	G	G	V	S	A	N	R	T	L	R	A	K	L	A	E	M	M	K	K	R	R	G	E	V	F	Y	A	R	P	E	F	C	T	D	N	G	A	M	I	.	.	A	Y	A	G	M	V	R	F	K	A	G	A
Query Conservation																																																										.	.
Alig confidence																																					.	.																				.	.
Template Conservation																																					.	.
Template Sequence		L	M	R	E	Q	A	T	M	R	G	I	T	T	L	V	F	S	G	G	V	I	H	N	R	L	L	R	A	R	L	A	H	Y	L	A	.	.	D	F	T	L	L	F	P	Q	S	L	P	A	G	D	G	G	L	S	L	G	Q	G	V	I	A	A	A	R	W	L	A	G	E
Template Known Secondary structure										T	T								S	G	G	G	G												T	T	.	.	T	S							S	S		S	S	G	G	G															T	T
Template Predicted Secondary structure																																					.	.
Template SS confidence
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.			.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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