Job Description P05852 Confidence 97.91% Date Thu Jan 5 10:59:01 GMT 2012 Rank 35 Aligned Residues 275 % Identity 19% Template c3qbwA_ PDB info PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate Resolution 2.23 Å

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		2	.	.	.	.	.	.	.	10	.					.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.																													.	.	.	.	.	.	.																.	.	.
Query SS confidence												.	.	.	.																													.	.	.	.	.	.	.																.	.	.
Query Sequence		R	V	L	G	I	E	T	S	C	D	.	.	.	.	E	T	G	I	A	I	Y	D	D	E	K	G	L	L	A	N	Q	L	Y	S	Q	V	K	L	H	A	D	Y	.	.	.	.	.	.	.	G	G	V	V	P	E	L	A	S	R	D	H	V	R	K	.	.	.	T	V	P	L	I	Q	A	A	L	K	E	S	G
Query Conservation												.	.	.	.																													.	.	.	.	.	.	.																.	.	.
Alig confidence												.	.	.	.																													.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence		R	Y	L	G	L	M	S	G	T	S	L	D	G	M	D	I	V	L	I	E	Q	G	D	R	T	T	L	L	A	S	H	Y	L	P	M	P	A	G	L	R	E	D	I	L	A	L	C	V	P	G	P	D	E	I	A	R	A	A	E	V	E	Q	R	W	V	A	L	A	A	Q	G	V	R	E	L	L	L	Q	Q	Q
Template Known Secondary structure										T	T		S										S	S	S																							S	S			T	T																											T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		68	.	70	.	.	.	.	.	.	.	.																.	80	.	.	.	.	.	.	.	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Query Sequence		L	T	A	K	D	I	D	A	V	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	G	P	G	L	V	G	A	L	L	V	G	.	.	.	.	.	.	A	T	V	G	R	S	L	A	F	A	W	D	V	P	A	I	P	V	H	H	M	E	G	H	L	L	A	P	M	L	E	D	N	P	P
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		M	S	P	D	E	V	R	A	I	G	S	H	G	Q	T	I	R	H	E	P	A	R	H	F	T	V	Q	I	G	N	P	A	L	L	A	E	L	T	G	I	D	V	V	A	D	F	R	R	R	D	V	A	A	G	G	Q	G	A	P	L	V	P	A	F	H	Q	A	L	.	.	.	.	.	.	.	.	.	.	F	S
Template Known Secondary structure				G	G	G															G	G	G	T																S	S													T	T							T								.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150											.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.											.
Predicted Secondary structure																																								.					.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.					.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		E	F	P	F	V	A	L	L	V	S	G	G	H	T	Q	L	I	S	V	T	G	I	G	Q	Y	E	L	L	G	E	S	I	D	D	A	A	G	E	.	A	F	D	K	.	T	A	K	L	L	G	L	D	Y	P	G	G	P	L	L	S	K	M	A	A	Q	G	T	A	G	.	.	.	.	.	.	.	.	.	.	R
Query Conservation																																								.					.																										.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.																.	.	.	.	.	.	.	.	.	.									.					.															.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.																.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Sequence		R	.	.	.	.	A	V	L	N	I	G	G	F	S	N	V	S	L	L	R	.	.	.	.	.	.	.	.	.	.	G	F	D	C	G	P	G	N	V	L	M	D	A	W	I	H	H	Q	R	G	E	H	F	D	R	D	G	A	.	.	.	W	A	A	S	G	Q	V	N	H	A	L	L	A	S	L	L	A	D	E
Template Known Secondary structure			.	.	.	.						S	S									.	.	.	.	.	.	.	.	.	.							S	S												S		S	S		G	G	G		.	.	.				T	S												T	S
Template Predicted Secondary structure			.	.	.	.																.	.	.	.	.	.	.	.	.	.																													.	.	.
Template SS confidence
		158					.	160	.	.	.	.	.	.	.	.	.	170	.	.	.											.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.				.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	F	P	R	P	M	T	D	R	P	G	L	D	F	S	F	S	G	L	K	T	F	A	A	N	T	I	R	D	N	G	T	D	D	Q	T	R	A	D	I	A	R	A	F	E	D	A	V	V	D	T	L	M	I	K	C	K	R	A	L	D	Q	T	G	F	K	R	L	V	M	A	G	G	V	S	A	N	R	T
Query Conservation
Alig confidence																										.	.	.	.	.	.																															.	.	.	.	.
Template Conservation																										.	.	.	.	.	.																															.	.	.	.	.
Template Sequence		F	F	A	A	R	G	P	K	S	T	G	R	E	R	F	N	L	P	W	L	Q	E	H	L	.	.	.	.	.	.	A	R	H	P	A	L	P	A	A	D	I	Q	A	T	L	L	E	L	S	A	R	S	I	S	E	S	L	L	D	A	.	.	.	.	.	Q	P	D	V	L	V	C	G	G	G	A	F	N	T	A
Template Known Secondary structure							S	S					T	T	T	S	S									.	.	.	.	.	.	T	S	S																												.	.	.	.	.								S	G	G	G	G
Template Predicted Secondary structure																										.	.	.	.	.	.																															.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250							.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		L	R	A	K	L	A	E	M	M	K	K	R	R	G	E	V	F	Y	A	R	P	E	F	C	T	D	.	.	N	G	A	M	I	A	Y	A	G	M	V	R	F	K	A
Query Conservation																												.	.
Alig confidence																.												.	.
Template Conservation																.
Template Sequence		L	M	K	R	L	A	M	L	M	P	E	A	R	V	.	A	S	T	D	E	Y	G	I	P	P	A	W	M	E	G	M	A	F	A	W	L	A	H	R	F	L	E	R
Template Known Secondary structure											T	T	S			.			G	G	G	G	T	S		G	G	G															T	T
Template Predicted Secondary structure																.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions