Job Description P05852 Confidence 95.36% Date Thu Jan 5 10:59:01 GMT 2012 Rank 76 Aligned Residues 284 % Identity 15% Template c3d2fC_ PDB info PDB header:chaperone Chain: C: PDB Molecule:heat shock protein homolog sse1; PDBTitle: crystal structure of a complex of sse1p and hsp70 Resolution 2.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.
Predicted Secondary structure																										.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	G	I	E	T	S	C	D	E	T	G	I	A	I	Y	D	D	E	K	G	L	L	A	.	.	N	Q	L	Y	S	Q	V	K	L	H	A	D	Y	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	F	G	L	D	L	G	N	N	N	S	V	L	A	V	A	R	N	R	G	I	D	I	V	V	N	E	V	S	N	R	S	T	P	S	V	V	G	F	G	P	K	N	R	Y	L	G	E	T	G	K	N	K	Q	T	S	N	I	K	N	T	V	A	N	L	K	R	I	I	G	L	D	Y	H	H	P	D	F	E	Q
Template Known Secondary structure									S	S									T	T								T	T			S	S									S	S	S				T							T	T	T		G	G	G									T	T		B	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
																															42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	P	E	L	A	S	R	D	H	V	R	K	T	V	P	L	I	Q	A	A	L	K	E	S	G	L	T	A	K	D	I	D	A	V	A	Y	T	A	G	P	G	L	V	G	A	L	L	V	G	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		E	S	K	H	F	T	S	K	L	V	E	L	D	D	K	K	T	G	A	E	V	R	F	A	G	E	K	H	V	F	S	A	T	Q	L	A	A	M	F	I	D	K	V	K	D	T	V	K	Q	D	T	K	A	N	.	.	.	.	.	.	I	T	D	V	C	I	A	V	P	P	W	Y	T	E	E	Q	R	Y	N	I
Template Known Secondary structure				T	T			S						T	T	S	B								T	T																												S		.	.	.	.	.	.										T	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.							.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.																		.																					.
Query SS confidence																																							.	.	.	.																		.																					.
Query Sequence		T	V	G	R	S	L	A	F	A	W	D	V	P	A	I	P	V	H	H	M	E	G	H	L	L	A	P	M	L	E	D	N	P	P	E	F	P	.	.	.	.	F	V	A	L	L	V	S	G	G	H	T	Q	L	I	S	V	T	.	G	I	G	Q	Y	E	L	L	G	E	S	I	D	D	A	A	G	E	A	F	.
Query Conservation																																							.	.	.	.																		.																					.
Alig confidence																																							.	.	.	.																		.																					.
Template Conservation
Template Sequence		A	D	A	A	R	I	A	G	L	N	P	V	R	I	V	N	D	V	T	A	A	G	V	S	Y	G	I	F	K	T	D	L	P	E	G	E	E	K	P	R	I	V	A	F	V	D	I	G	H	S	S	Y	T	C	S	I	M	A	F	K	K	G	Q	L	K	V	L	G	T	A	C	D	K	H	F	G	G	R	D	F
Template Known Secondary structure								T	T																											S	S	S												S	S											T	T											T	T		S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
			167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	D	K	T	A	K	L	L	G	L	D	Y	P	G	G	P	L	L	S	K	M	A	A	Q	G	T	A	G	R	F	V	F	P	R	P	M	T	D	R	P	G	L	D	F	S	F	S	G	L	K	T	F	A	A	N	T	I	R	D	N	G	T	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.																																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.								.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	A	I	T	E	H	F	.	.	.	.	.	.	.	.	.	A	D	E	F	K	T	K	Y	K	I	D	I	R	E	N	P	K	A	Y	N	R	.	.	.	.	.	.	.	.	.	.	I	L	T	A	A	E	K	L	K	K	V	L	S	A	N	T	N	A	P	F	S	V	E	S	V	M	N	D	V	D	V	S
Template Known Secondary structure										.	.	.	.	.	.	.	.	.								T	S			G	G	G								.	.	.	.	.	.	.	.	.	.																S							S	S	S	S	S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.										.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.											.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
				230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure		.	.																															.	.	.	.	.
Query SS confidence		.	.																															.	.	.	.	.
Query Sequence		.	.	Q	T	R	A	D	I	A	R	A	F	E	D	A	V	V	D	T	L	M	I	K	C	K	R	A	L	D	Q	T	G	.	.	.	.	.	F	K	R	L	V	M	A	G	G	V	S	A	N	R	T	L	R	A	K	L	A	E	M	M	K	K	R	R	G	E	V	F	Y	A	R	P	E	F	C	T	D	N	G
Query Conservation		.	.																															.	.	.	.	.
Alig confidence		.	.													.																		.	.	.	.	.																									.	.	.										.	.	.
Template Conservation																.																																															.	.	.										.	.	.
Template Sequence		S	Q	L	S	R	E	E	L	E	E	L	V	K	P	.	L	L	E	R	V	T	E	P	V	T	K	A	L	A	Q	A	K	L	S	A	E	E	V	D	F	V	E	I	I	G	G	T	T	R	I	P	T	L	K	Q	S	I	S	E	A	F	.	.	.	G	K	P	L	S	T	T	L	N	.	.	.	Q	D	E	A
Template Known Secondary structure													T			.			T	T	T	T										T	T			G	G	G								S	G	G	G	G	S												.	.	.	T	S						S		.	.	.	T	T	T
Template Predicted Secondary structure																.																																															.	.	.										.	.	.
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.				.	360	.	.	.	.	.	.	.				.	.	370	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	I	A	Y	A	G	M	V	R	F	K	A	G	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	K	G	A	A	F	I	C	A	I	H	S	P	T	L
Template Known Secondary structure													T		S	S
Template Predicted Secondary structure
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions