Job Description P05852 Confidence 98.45% Date Thu Jan 5 10:59:01 GMT 2012 Rank 25 Aligned Residues 245 % Identity 14% Template c3cqyA_ PDB info PDB header:transferase Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase; PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1 Resolution 2.30 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.										.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.															.	100	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	S	R	D	H	V	R	K	T	V	P	L	I	Q	A	A	L	K	E	S	G	L	T	A	K	D	I	D	A	V	A	Y	.	.	.	.	.	.	.	.	.	T	A	G	P	G	L	V	G	A	L	L	V	G	A	T	V	G	R	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	F	A	W
Query Conservation																																			.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	L	D	R	S	V	G	K	L	F	A	L	A	V	N	N	L	L	A	K	T	K	I	A	K	D	E	I	I	A	I	G	S	H	G	Q	T	V	R	H	X	P	N	L	E	V	G	F	T	L	Q	I	G	D	P	N	T	I	A	T	E	T	G	I	D	V	I	A	D	F	R	R	K	D	I	A	L	G	G	Q
Template Known Secondary structure																										G	G	G															T	T	S	S	S							S										S	S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		D	V	P	A	I	P	V	H	H	M	E	G	H	L	L	A	P	M	L	E	D	N	P	P	E	F	P	F	V	A	L	L	V	S	G	G	H	T	Q	L	I	S	V	T	G	I	G	Q	Y	E	L	L	G	E	S	I	D	D	A	A	G	E	A	F	D	K	T	A	K	L	L	.	G	L	D	Y	P	G	G	P
Query Conservation																																																																									.
Alig confidence												.	.	.	.	.	.											.	.	.																																.	.										.
Template Conservation												.	.	.	.	.	.											.	.	.																																.	.
Template Sequence		G	A	P	L	V	P	A	F	H	Q	.	.	.	.	.	.	Q	T	F	A	Q	V	G	K	K	R	.	.	.	V	I	L	N	I	G	G	I	A	N	I	T	Y	L	P	G	N	S	E	E	V	L	G	F	D	T	G	P	G	N	T	.	.	L	I	D	A	W	V	Q	Q	V	K	N	E	S	Y	D	K	N	G
Template Known Secondary structure												.	.	.	.	.	.						T	T				.	.	.						S	S									S	S	S	S										S	S		.	.													S	S		G	G	G
Template Predicted Secondary structure												.	.	.	.	.	.											.	.	.																																.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.			.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		182	.	.	.	.	.	.	.	190	.	.	.											.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	K	M	A	A	Q	G	T	A	G	.	.	.	.	.	.	.	.	.	.	R	F	V	F	P	R	P	M	T	D	R	P	G	L	D	F	S	F	S	G	L	K	T	F	A	A	N	T	I	R	D	N	G	T	D	D	Q	T	R	A	D	I	A	R	A	F	E	D	A	V	V	D	T	L	M	I	K	C
Query Conservation														.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.									.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.
Template Conservation			.	.	.																																												.	.	.	.	.	.
Template Sequence		A	.	.	.	W	A	A	S	G	K	T	D	P	Q	L	L	A	Q	L	L	S	H	P	Y	F	S	L	A	Y	P	K	S	T	G	R	E	L	F	N	Q	A	W	L	E	Q	Q	L	.	.	.	.	.	.	S	A	F	N	Q	L	N	E	E	D	I	Q	S	T	L	L	D	L	T	C	H	S	I	A	Q	D	I
Template Known Secondary structure			.	.	.					S												T		G	G	G	G	S		S	S					S	S	S	S	S								T	.	.	.	.	.	.	T	T		T	T	S
Template Predicted Secondary structure			.	.	.																																												.	.	.	.	.	.
Template SS confidence
		213				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																														.						.	.
Query SS confidence																																														.						.	.
Query Sequence		K	R	A	L	D	Q	T	G	F	K	R	L	V	M	A	G	G	V	S	A	N	R	T	L	R	A	K	L	A	E	M	M	K	K	R	R	G	E	V	F	Y	A	R	P	.	E	F	C	T	D	.	.	N	G	A	M	I	A	Y	A	G	M	V	R	F	K	A
Query Conservation																																														.						.	.
Alig confidence					.	.	.																												.	.										.						.	.
Template Conservation					.	.	.																												.	.
Template Sequence		L	K	L	.	.	.	A	Q	E	G	E	L	F	V	C	G	G	G	A	F	N	A	E	L	X	Q	R	L	A	A	L	L	P	.	.	G	Y	R	I	D	T	T	S	A	L	G	V	D	P	K	W	A	E	G	I	A	F	A	W	L	A	X	R	Y	Q	L	G
Template Known Secondary structure					.	.	.		S	S							S	G	G	G	G													T	.	.	T						G	G	G	G	T			T	T	T															T	T
Template Predicted Secondary structure					.	.	.																												.	.
Template SS confidence
		284	.	.				.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.			.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions