Job Description P05852 Confidence 97.85% Date Thu Jan 5 10:59:01 GMT 2012 Rank 37 Aligned Residues 254 % Identity 16% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	L	G	I	E	T	S	C	D	E	T	G	I	A	I	Y	D	D	E	K	G	L	L	A	N	Q	L	Y	S	Q	V	K	L	H	A	D	Y	G	G	V	V	P	E	L	A	S	R	D	H	V	R	K	T	V	P	L	I	Q	A	A	L	K	E	S	G	L	T	A	K	D	I	D	A	V	A	Y	T	A	G
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Sequence		Q	F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	L	G	G	E	V	L	I	D	T	K	I	D	I	.	.	.	.	.	.	.	.	.	.	.	H	E	I	D	Q	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I	A	I	T	L	.
Template Known Secondary structure										T	T									T	T	S											.	.	.	.	.	.	.	.	.	.	.				B																			T	T	T	T												.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.																																						.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.												.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		82	.	.	.	.	.	.	.												90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	L	V	G	A	L	L	.	.	.	.	.	.	.	.	.	.	.	V	G	A	T	V	G	R	S	L	A	F	A	W	D	V	P	A	I	P	V	H	H	M	E	G	H	L	L	A	P	M	L	E	D	N	P	P	E	F	P	F	V	A	L	L	V	S	G	G	H	T	Q	L	I	S	V	T	G	I	G	Q
Query Conservation										.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	L	V	N	S	E	Q	G	I	V	L	Q	M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	F	V	A	N	D	T	R	A	W	A	L	A	E	K	L	F	G	H	S	Q	D	V	D	N	S	V	L	I	S	I	H	H	G	L	G	A	G	I	V	L	D	G	R	V
Template Known Secondary structure		S	S				T	T	T	T						S	S	S	B		S	S	B												S																			S	T	T	T	T		S	S							S	S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		151	.	.	.	.	.	.	.	.	160																										.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.										.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		Y	E	L	L	G	E	S	I	D	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	G	E	A	F	D	K	T	A	K	L	L	G	L	D	Y	P	.	.	.	.	.	.	.	.	.	G	G	P	L	L	S	K	M	A	A	Q	G	T	A	G	R	F	V
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	Q	G	R	H	G	N	I	G	E	L	G	H	I	Q	I	D	P	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	A	A	A	D	G	D	P	.	.	.	.
Template Known Secondary structure				T	T	T	T		T	T	B		T	T	S	B			T	T			B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S												T	T			.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.
Predicted Secondary structure																																																																													.
Query SS confidence																																																																													.
Query Sequence		F	P	R	P	M	T	D	R	P	G	L	D	F	S	F	S	G	L	K	T	F	A	A	N	T	I	R	D	N	G	T	D	D	Q	T	R	A	D	I	A	R	A	F	E	D	A	V	V	D	T	L	M	I	K	C	K	R	A	L	D	Q	T	G	F	K	R	L	V	M	A	G	G	V	S	A	.	N	R	T	L
Query Conservation																																																																													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	V	I	N	L	F	N	P	E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											S						S	G	G	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																								309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		276	.	.	.	280	.	.	.	.	.								.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure												.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.
Query Sequence		R	A	K	L	A	E	M	M	K	K	.	.	.	.	.	.	.	R	R	G	E	V	F	Y	A	R	P	E	F	C	T	D	N	G	A	M	I	A	Y	A	G	M	V	R
Query Conservation												.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.										.	.	.
Template Conservation																												.	.	.
Template Sequence		Y	P	S	I	E	Q	C	I	R	E	Q	S	L	P	V	Y	H	Q	D	L	K	L	V	E	S	R	.	.	.	F	Y	K	Q	A	T	M	P	G	A	A	L	I	K	Q
Template Known Secondary structure													S						T	T							S	.	.	.		S	S		T	T
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.				.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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