Job Description P05852 Confidence 97.69% Date Thu Jan 5 10:59:01 GMT 2012 Rank 43 Aligned Residues 276 % Identity 14% Template c1mwmA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																					.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	V	L	G	I	E	T	S	C	D	E	T	G	I	A	I	Y	D	D	E	K	G	L	L	A	N	Q	L	Y	S	Q	V	K	L	H	A	D	Y	G	G	V	V	P	E	L	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	D	H	V	R	K	T	V	P	L	I	Q
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.
Template Sequence		M	L	V	.	F	I	D	D	G	S	T	N	I	K	L	Q	W	Q	E	S	D	G	T	I	K	Q	H	I	S	P	N	S	F	K	R	E	W	A	V	S	F	G	D	K	K	V	F	N	Y	T	L	N	G	E	Q	Y	S	F	D	P	I	S	P	D	T	N	I	A	W	Q	Y	S	D	V	N	V	V	A	V	H
Template Known Secondary structure					.						S	S									T	T	S													S	S					S	S	S	S							S	S	S														T	G	G	G	G	S
Template Predicted Secondary structure					.
Template SS confidence
		1	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence		A	A	L	K	E	S	G	L	T	A	K	D	I	D	A	V	A	.	.	.	.	.	.	Y	T	A	G	P	G	L	V	G	A	L	L	V	G	A	T	V	G	R	.	.	.	.	.	.	.	S	L	A	F	A	W	D	V	P	A	I	P	V	H	H	M	E	G	H	L	L	A	P	M	L	E	D	N	P	P	E
Query Conservation																			.	.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	A	L	L	T	S	G	L	P	V	S	E	V	D	I	V	C	T	L	P	L	T	E	Y	Y	D	R	N	N	Q	P	N	T	E	N	I	E	R	K	K	A	N	F	R	K	K	I	T	L	N	G	G	D	T	F	T	I	K	D	V	K	V	M	P	E	S	I	P	A	G	Y	E	V	L	Q	E	L	D	E	L
Template Known Secondary structure						T	S	S			S															B		T	T	S		B												T	T	S					T	T	B													S										T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																					.																																		.	.
Query SS confidence																					.																																		.	.
Query Sequence		F	P	F	V	A	L	L	V	S	G	G	H	T	Q	L	I	S	V	T	.	G	I	G	Q	Y	E	L	L	G	E	S	I	D	D	A	A	G	E	A	F	D	K	T	A	K	L	L	G	L	D	Y	P	G	.	.	G	P	L	L	S	K	M	A	A	Q	G	T	A	G	R	F	V	F	P	R	P	M	T	D	R
Query Conservation																					.																																		.	.
Alig confidence																					.																																		.	.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	L	L	I	I	D	L	G	G	T	T	L	D	I	S	Q	V	M	G	K	L	S	G	I	S	K	I	Y	G	D	S	S	L	G	V	S	L	V	T	S	A	V	K	D	A	L	S	L	A	R	T	K	G	S	S	Y	L	A	D	D	I	I	I	H	R	K	D	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S									G	G	G										T	T														T	T			T	T	G	G	G										T	T	T		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	L	D	F	S	F	S	G	L	K	T	F	A	A	N	T	I	R	D	N	G	T	D	D	Q	T	R	A	D	I	A	R	A	F	E	D	A	V	V	D	T	L	M	I	K	C	K	R	A	L	D	Q	T	G	F	K	R	L	V	M	A	G	G	V	S	A	N	R	T	L	R	A	K	L	A	E	M	M	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	Y	L	K	Q	R	I	N	D	E	N	K	I	S	I	V	T	E	A	M	N	E	A	L	R	K	L	E	Q	R	V	L	N	T	L	N	E	F	S	G	Y	T	H	V	M	V	I	G	G	G	A	.	.	E	L	I	C	D	A	V	K	K	H	T	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.									S		S																										T	T			S								S	T	T		.	.												T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.
Template SS confidence
																232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.			.	.	.	.	.	.	290	.	.	.	.	.
		285	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		K	R	R	G	E	V	F	Y	A	R	.	P	E	F	C	T	D	N	G	A	M	I
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		I	R	D	E	R	F	F	K	T	N	N	S	Q	Y	D	L	V	N	G	M	Y	L
Template Known Secondary structure				G	G	G					S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions