Job Description P41407 Confidence 41.17% Date Thu Jan 5 12:01:28 GMT 2012 Rank 146 Aligned Residues 126 % Identity 13% Template c3o8qB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae Resolution 1.45 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		M	S	K	V	L	V	L	K	S	S	I	L	A	G	Y	S	Q	S	N	Q	L	S	D	Y	F	V	E	Q	W	R	E	K	H	S	A	D	E	I	T	V	R	D	L	A	A	N	P	I	P	V	L	D	G	E	L	V	G	A	L	R	P	S	D	A	P	L	T	P	R	Q	Q	E	A	L	A	L	S	D	E	.
Query Conservation																																																																																	.
Alig confidence					.											.													.	.	.																																																		.
Template Conservation					.											.													.	.	.
Template Sequence		I	D	Q	.	Y	A	V	F	G	N	P	I	N	H	.	S	K	S	P	F	I	H	T	L	F	A	R	.	.	.	Q	T	Q	Q	S	M	I	Y	T	A	Q	C	V	P	V	D	G	F	T	E	A	A	K	H	F	F	A	Q	G	G	R	G	C	N	V	T	V	P	F	K	E	E	A	Y	R	F	A	D	R	L
Template Known Secondary structure					.						S	S		T	T	.													.	.	.			T												T	T												T	T								T	T										S
Template Predicted Secondary structure					.											.													.	.	.
Template SS confidence
		5	.	.		.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	I	A	E	L	K	A	H	D	V	I	V	I	A	A	P	M	Y	N	F	N	I	S	T	Q	L	K	N	Y	F	D	L	V	A	R	A	G	V	T	F	R	Y	T	E	N	G	P	E	G	L	V	T	G	K	K	A	I	V	I	T	S	R	G
Query Conservation		.	.
Alig confidence		.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	R	A	R	L	A	G	A	V	N	T	L	K	K	L	D	D	G	E	I	L	G	D	N	T	D	G	E	G	L	V	Q	D	L	L	A	Q	Q	V	L	.	.	.	.	.	.	.	.	.	.	.	L	K	G	A	T	I	L	L	I	G	A	G	G
Template Known Secondary structure									T			S						T	T	S																			T	T			.	.	.	.	.	.	.	.	.	.	.		T	T									S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120												.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions