Job Description P41407 Confidence 99.93% Date Thu Jan 5 12:01:28 GMT 2012 Rank 29 Aligned Residues 169 % Identity 18% Template c2zkiH_ PDB info PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872) Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	V	L	V	L	K	S	S	I	L	A	G	Y	S	Q	S	N	Q	L	S	D	Y	F	V	E	Q	W	R	E	K	H	S	A	D	E	I	T	V	R	D	L	A	A	N	P	I	P	V	L	D	G	E	L	V	G	A	L	R	P	S	D	A	P	L	T	P	R	Q	Q	E	A	L	A	L	S	D	E	L	I
Query Conservation
Alig confidence											.	.	.			.																	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.			.																	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	N	I	L	V	L	F	Y	G	.	.	.	Y	G	.	S	I	V	E	L	A	K	E	I	G	K	G	A	E	E	A	.	.	G	A	E	V	K	I	R	R	V	R	E	T	L	P	P	E	F	Q	S	R	I	P	F	D	K	V	K	D	I	P	E	V	T	L	D	D	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											.	.	.	S	S	.																	.	.	T												S		G	G	G		T	T			G	G	G	S	T	T	S		B						.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.			.																	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.				.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	K	A	H	D	V	I	V	I	A	A	P	M	Y	N	F	N	I	S	T	Q	L	K	N	Y	F	D	L	V	A	R	A	G	V	T	F	R	Y	T	E	N	G	P	E	G	L	V	T	G	K	K	A	I	V	I	T	S	R	G	G	I	H	K	D	G	P	T	D	L	V	T	P	Y	L	S	T	F	L
Query Conservation
Alig confidence		.	.																																	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation		.	.																																	.	.	.	.	.	.	.	.	.																										.	.
Template Sequence		.	.	M	R	W	A	D	G	F	A	I	G	S	P	T	R	Y	G	N	M	A	G	G	L	K	T	F	L	D	T	T	A	I	L	.	.	.	.	.	.	.	.	.	W	K	D	N	V	L	Y	G	K	P	V	T	F	F	T	E	A	S	T	V	H	G	G	H	E	.	.	T	T	I	L	T	M	S	T	Y	A
Template Known Secondary structure		.	.					S									B	T	T	B											T	T				.	.	.	.	.	.	.	.	.		T	T	T	T	T	T	T									B	S	S	T	T	S	S	S	S	.	.							T
Template Predicted Secondary structure		.	.																																	.	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
				68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.										100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.
		162	.	.	.	.	.	.	.	170																	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	F	I	G	I	T	D	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	F	A	E	G	I	A	Y	G	P	E	M	A	A	K	A	Q	S	D	A	K	A	A	I	D	S	I	V	S
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	H	F	G	M	I	I	V	P	I	G	Y	G	I	P	E	L	F	Q	T	T	T	G	G	G	P	Y	G	A	T	H	L	G	S	K	E	E	L	D	E	M	E	R	K	I	A	R	F	Q	G	K	R	I	T	E
Template Known Secondary structure					T							T	T		S	T						S	S	S		B	T	T	B				B	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions