Job Description P41407 Confidence 40.61% Date Thu Jan 5 12:01:28 GMT 2012 Rank 147 Aligned Residues 125 % Identity 11% Template c2hk8B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution Resolution 2.35 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.
Query SS confidence																																																															.	.	.
Query Sequence		S	K	V	L	V	L	K	S	S	I	L	A	G	Y	S	Q	S	N	Q	L	S	D	Y	F	V	E	Q	W	R	E	K	H	S	A	D	E	I	T	V	R	D	L	A	A	N	P	I	P	V	L	D	G	E	L	V	G	A	L	R	P	S	.	.	.	D	A	P	L	T	P	R	Q	Q	E	A	L	A	L	S	D
Query Conservation																																																															.	.	.
Alig confidence															.													.	.	.																																	.	.	.
Template Conservation															.													.	.	.
Template Sequence		T	Q	L	Y	G	V	I	G	F	P	V	K	H	.	S	L	S	P	V	F	Q	N	A	L	I	R	.	.	.	Y	A	G	L	N	A	V	Y	L	A	F	E	I	N	P	E	E	L	K	K	A	F	E	G	F	K	A	L	K	V	K	G	I	N	V	T	V	P	F	K	E	E	I	I	P	L	L	D	Y	V	E
Template Known Secondary structure										S	S		T	T	.		S											.	.	.			T		S										G	G	G											T	T								T	T		T	T	T	T	G	G	G		S
Template Predicted Secondary structure															.													.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	I	A	E	L	K	A	H	D	V	I	V	I	A	A	P	M	Y	N	F	N	I	S	T	Q	L	K	N	Y	F	D	L	V	A	R	A	G	V	T	F	R	Y	T	E	N	G	P	E	G	L	V	T	G	K	K	A	I	V	I	T	S	R	G
Query Conservation
Alig confidence																	.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.																									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	T	A	K	E	I	G	A	V	N	T	V	K	F	E	.	N	G	K	A	Y	G	Y	N	T	D	W	I	G	F	L	K	S	L	K	S	L	I	P	E	.	.	.	.	.	.	.	.	.	.	.	V	K	E	K	S	I	L	V	L	G	A	G	G
Template Known Secondary structure								T									.	T	T																	T	T	T		S		.	.	.	.	.	.	.	.	.	.	.		T	T									S
Template Predicted Secondary structure																	.																									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120												.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions