Return to main results Retrieve Phyre Job Id

Job DescriptionP41407
Confidence89.20%DateThu Jan 5 12:01:28 GMT 2012
Rank73Aligned Residues52
% Identity19%Templatec2dlnA_
PDB info PDB header:ligase(peptidoglycan synthesis)Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1. .......10.........20.........30.........40.........50....
Predicted Secondary structure 

.


















Query SS confidence 

.



















































Query Sequence  MS. KVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGE
Query Conservation 
 .




 



   
 
  
                
   

    
      
Alig confidence 

.





























..



















Template Conservation 
  

 
  

   
  
 
 
   
  

   ..
  
  

            
Template Sequence  MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREG. . GIDAYPVDPKEVDVTQLKSM
Template Known Secondary structure 

S


SSTTT..T

TTTS
GGGSGGG
Template Predicted Secondary structure 







..





Template SS confidence 






















































   1........10.........20.........30... ......40.........50...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions