Job Description P07018 Confidence 10.98% Date Thu Jan 5 11:00:03 GMT 2012 Rank 66 Aligned Residues 118 % Identity 17% Template c1nfoA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) Resolution 2.00 Å

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		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.							.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.							.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure																										.	.	.	.	.	.																							.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.																							.	.	.	.	.	.
Query Sequence		A	R	A	G	E	Q	G	R	G	F	A	V	V	A	G	E	V	R	N	L	A	S	R	S	.	.	.	.	.	.	A	Q	A	A	K	E	I	K	G	L	I	E	E	S	V	N	R	V	Q	Q	G	S	.	.	.	.	.	.	K	L	V	N	N	A	A	A	T	M	I	D	I	V	S	S	V	T	R	V	N	D
Query Conservation																										.	.	.	.	.	.																							.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.																							.	.	.	.	.	.
Template Conservation
Template Sequence		Q	R	W	E	L	A	L	G	R	F	W	D	Y	L	R	W	V	Q	T	L	S	E	Q	V	Q	E	E	L	L	S	S	Q	V	T	Q	E	L	R	A	L	M	D	E	T	M	K	E	L	K	A	Y	K	S	E	L	E	E	Q	R	L	S	K	E	L	Q	A	A	Q	A	R	L	G	A	D	M	E	D	V	C	G
Template Known Secondary structure																															S	S																									T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		451	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	G	E	I	A	S	A	S	E	E	Q	Q	R	G	I	E	Q	V	A	Q	A	V	S	Q	M	D	Q	V	T	Q	Q	N	A	S	L	V	E	E	A	A	V	A	T	E	Q	L	A	N	Q	A	D	H	L	S	S	R	V	A	V	F	T
Query Conservation
Alig confidence														.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.																		.	.	.	.	.	.
Template Sequence		R	L	V	Q	Y	R	G	E	V	Q	A	M	.	.	.	.	.	.	L	G	Q	S	T	E	E	L	R	V	R	L	A	S	H	L	R	.	.	.	.	.	.	K	L	R	K	R	L	L	R	D	A	D	A	L	Q	K	C	L	A	V	Y	Q
Template Known Secondary structure													T	.	.	.	.	.	.	T	T																.	.	.	.	.	.																			T	T
Template Predicted Secondary structure														.	.	.	.	.	.																		.	.	.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.							.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.							.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions