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Job DescriptionP67095
Confidence98.78%DateWed Jan 25 15:21:00 GMT 2012
Rank58Aligned Residues159
% Identity14%Templatec3floG_
PDB info PDB header:transferaseChain: G: PDB Molecule:dna polymerase alpha subunit b; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10. ........20....... ..30.........40. ........50.........
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Query Sequence  MKLMFASDIH. . . . . GSLPATERVLELFAQS. GAQWLVILGDVLNH. . . . . . . . . . . . . . . . GPRNALPEGYAPAKVAER
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Template Sequence  LKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQFKTQPKTLDELFLKLFTPI
Template Known Secondary structure  S

S
TT



TT

SS
SSBTTST




TT
SS

SST
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   393......400.........410.........420.........430.........440.........450.........460.........470..
 
   60... ......70..... ....80.........90.........100......
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Query Sequence  LNEV. . AHKVIAVRGNCD. . . . . . . . . . . . . . . SEVDQMLLHFPITAPWQQVLLEKQRLFLTHG. . . . . . . . . . . . . . . .
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Template Sequence  LKTISPHIQTVLIPSTKDAISNHAAYPQASLIRKALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLKEVIKGGTTS
Template Known Secondary structure  TTS
TTS

TTBTT
S

SBSB



T

TTT

BSTT

S




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   473......480.........490.........500.........510.........520.........530.........540.........550..
 
   107..110.........120.........130.........140.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSI
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Template Sequence  SRYRLDRVSEHILQQRRYYPIFPGSIRTHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPGRFIR
Template Known Secondary structure  S
TBS


SS






B
GGGGGGGB
GGG


S


SS

TT


SB
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   553......560.........570.........580.........590.........600.........610.........620.........630..
 
   150.........160.
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Query Sequence  PKGGNPASYGML
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Template Sequence  ATGNR. GSYAQI
Template Known Secondary structure  TTS
B.
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   658.660.. ......
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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