 |
Job Description | P67095 | Confidence | 28.38% | Date | Wed Jan 25 15:21:00 GMT 2012 |
Rank | 95 | Aligned Residues | 68 |
% Identity | 15% | Template | c2jfzB_ |
PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:glutamate racemase; |
PDBTitle: crystal structure of helicobacter pylori glutamate racemase2 in complex with d-glutamate and an inhibitor
|
Resolution | 1.86 Å |
|
 |
  |   |
2 | . | . | . | . | . | |
. | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | L | M | F | A | . |
S | D | I | H | G | S | L | P | A | T | E | R | V | L | E | L | F | A | Q | S | G | A | Q | W | L | V | I | L | G | D | V | L | N | . |
. |
H | G | P | R | N | A | L | P | E | G | Y | A | P | A | K | V | A | E | R | L | N | E | V | A | H | K | V | I | A | V | R | G | N |
Query Conservation |   |
|
|
|   |
|
| . |
|
|
|
|
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|
|   |   |
|
|
|   |   | . | . |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |
|
|
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|
|
|   |
|
| . | . | . | . |
|
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |
|
|   |   |
|   |   |   |   |
|
|
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|   |
|
|
|
|
|
|
Template Sequence |   |
M | K | I | G | V | F | D | S | G | V | G | G | . |
. |
. |
. |
F | S | V | L | K | S | L | L | K | A | R | L | F | D | E | I | I | Y | Y | G | D | S | A | R | V | P | Y | G | T | K | D | P | T | T | I | K | Q | F | G | L | E | A | L | D | F | F | K | P | H | E | I | E | L | L | I | V | A | C | N |
Template Known Secondary structure |   |
|  |  |  |  |  |  | S | S | G | G | G | . | . | . | . |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  |  |  |
| T | T | T |
|
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
| S |  |  |  |  |
|
|  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | |
|
|
|
. | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|