Phyre 2 alignment of P56262 with d1wm1a

Job Description P56262
Confidence 99.69% Date Thu Jan 5 12:06:23 GMT 2012

Rank 160 Aligned Residues 211

% Identity 20% Template d1wm1a_

SCOP info alpha/beta-Hydrolases alpha/beta-Hydrolases Proline iminopeptidase-like

Resolution 2.10

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	P	D	D	A	I	V	A	G	F	T	S	I	P	S	Q	G	D	N	M	P	A	Y	H	A	R	P	K	Q	S	D	G	P	L	P	V	V	I	V	V	Q	E	I	F	G	V	H	E	H	I	R	D	I	C	R	R	L	A	L	E	G	Y	L	A	I	A	P	E	L	Y	F	R	E	G	D	P	N	D	F	A
Query Conservation
Alig confidence																															.	.	.	.																										.
Template Conservation																															.	.	.	.																										.
Template Sequence	Y	P	P	L	A	A	Y	D	S	G	W	L	D	T	G	D	G	H	R	I	Y	W	E	L	S	G	N	P	N	G	.	.	.	.	K	P	A	V	F	I	H	G	G	P	G	G	G	I	S	P	H	H	R	Q	L	F	D	P	E	.	R	Y	K	V	L	L	F	D	Q	R	G	C	G	R	S	R	P	H	A	S
Template Known Secondary structure							S								S	S	S											T	T	S	.	.	.	.									T	T	T					G	G	G	G	G	G	S		T	T	.	T									T	T	S	T	T		B	S	T	T
Template Predicted Secondary structure																															.	.	.	.																										.
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	I	P	T	L	L	S	G	L	V	A	K	V	P	D	S	Q	V	L	A	D	L	D	H	V	A	S	W	A	S	R	N	G	G	D	V	H	R	L	M	I	T	G	F	C	W	G	G	R	I	T	W	L	Y	A	A	H	N	P	Q	L	K	A	A	V	A	W	Y	G	K	L	T	G	D	K	S	L	N	S	P
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template Sequence	L	D	N	N	T	T	W	H	L	V	.	.	.	.	.	.	.	.	.	A	D	I	E	R	L	R	E	M	A	G	V	.	.	.	.	.	E	Q	W	L	V	F	G	G	S	W	G	S	T	L	A	L	A	Y	A	Q	T	H	P	E	R	V	S	E	M	V	L	R	G	I	F	T	L	R	K	Q	R	L	H	W
Template Known Secondary structure		T	T		S						.	.	.	.	.	.	.	.	.										T	T		.	.	.	.	.	S	S							T														G	G	G								S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.													.	.	.	.	.
Template SS confidence
	83	.	.	.	.	.	.	90	.	.										.	.	.	.	.	.	.	100	.	.	.	.						.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.

	183	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	K	Q	P	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	Y	Q	D	G	A	S	R	F	F	P	E	K	W	E	R	V	L	S	I	L	S	D	D	E	R	K	D	V	I	A	A	Y	R	Q	R	L	T	S	A	D	P	Q	V	Q	L	E	A	A	K	L	W	S	V	W	E	G	E	T	V	T	L	L	P	S	R	E	S	A	S	F	G	E	D	D	F	A	L	A	F
Template Known Secondary structure			T	S	S	G	G	G	T	S									T	T	S		T	T	G	G	G											T		S																		T	T	S	S	S	S			G	G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.

																								188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	T	D	L	N	A	P	I	L	G	L	Y	G	G	Q	D	N	S	I	P	Q	E	S	V	E	T	M	R	Q	A	L	R	A	A	N	A	K	A	E	I	I	V	Y	P	D	A	G	H	A	F	N	A	D	Y	R	P
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.																			.	.	.
Template Conservation																																																								.	.	.	.																			.	.	.
Template Sequence	A	R	I	E	N	H	Y	F	T	H	L	G	F	L	E	S	D	D	Q	L	L	R	N	V	P	L	I	R	H	I	P	A	V	I	V	H	G	R	Y	D	M	A	C	Q	V	Q	N	A	W	D	L	A	K	A	W	.	.	.	.	P	E	A	E	L	H	I	V	E	G	A	G	H	S	Y	D	E	P	.	.	.
Template Known Secondary structure										T	G	G	G		S	S	T	T					T	G	G	G	G	T	T	S								T	T		S	S	S													.	.	.	.	T	T	S						T	T			S	S	T	T	S		.	.	.
Template Predicted Secondary structure																																																								.	.	.	.																			.	.	.
Template SS confidence
	229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

	245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	Y	H	A	A	S	A	E	D	G	W	Q	R	M	L	E	W	F	K	Q	Y	G	G
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	G	I	L	H	Q	L	M	I	A	T	D	R	F	A	G
Template Known Secondary structure	.	.	.	.	.	.	.	.														T
Template Predicted Secondary structure	.	.	.	.	.	.	.	.
Template SS confidence
									302	.	.	.	.	.	.	.	310	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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