Job Description P56262 Confidence 99.69% Date Thu Jan 5 12:06:23 GMT 2012 Rank 155 Aligned Residues 198 % Identity 12% Template c3fleB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:se_1780 protein; PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis. Resolution 2.01 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.						.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																																		.	.																							.	.	.	.	.
Query SS confidence																																		.	.																							.	.	.	.	.
Query Sequence		G	P	L	P	V	V	I	V	V	Q	E	I	F	G	V	H	E	H	I	R	D	I	C	R	R	L	A	L	E	G	Y	L	.	.	A	I	A	P	E	L	Y	F	R	E	G	D	P	N	D	F	A	D	I	P	T	L	.	.	.	.	.	L	S	G	L	V	A	K	V	P	D	S	Q	V	L	A	D	L	D	H
Query Conservation																																		.	.																							.	.	.	.	.
Alig confidence						.																												.	.																							.	.	.	.	.
Template Conservation						.
Template Sequence		K	T	T	A	.	T	L	F	L	H	G	Y	G	G	S	E	R	S	E	T	F	X	V	K	Q	A	L	N	K	N	V	T	N	E	V	I	T	A	R	V	S	S	E	G	K	V	Y	F	D	K	K	L	S	A	A	N	P	I	V	K	V	E	F	K	D	N	K	N	G	N	F	K	E	N	A	Y	W	I	K	E
Template Known Secondary structure						.							T	T			G	G	G	G										T	T			S									T	T	S					S	S						S								S	S
Template Predicted Secondary structure						.
Template SS confidence
		44	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	S	W	A	S	R	N	G	G	D	V	H	R	L	M	I	T	G	F	C	W	G	G	R	I	T	W	L	Y	A	A	H	N	P	Q	L	K	A	A	V	A	W	Y	G	K	L	T	G	D	K	S	L	N	S	P	K	Q	P	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.
Template Sequence		V	L	S	Q	L	K	S	Q	F	.	G	I	Q	Q	F	N	F	V	G	H	S	X	G	N	X	S	F	A	F	Y	X	K	N	Y	G	D	D	R	H	L	P	Q	L	K	K	E	V	N	I	A	G	V	Y	N	G	I	L	N	X	N	E	N	V	N	E	I	I	V	D	K	Q	G	K	P	S	R	X	N	A	A
Template Known Secondary structure											.											T														T	T		T	T	S										S			T	T			B	T	T	T	B		T	T				B		S	S			B	S	S
Template Predicted Secondary structure											.
Template SS confidence
		125	.	.	.	.	130	.	.	.		.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
											188	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																.	.	.	.	.	.																										.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																.	.	.	.	.	.																										.	.
Query Sequence		.	.	.	.	.	.	.	.	.	I	A	T	D	L	N	A	P	I	L	G	L	Y	G	G	.	.	.	.	.	.	Q	D	N	S	I	P	Q	E	S	V	E	T	M	R	Q	A	L	R	A	A	N	A	K	A	E	.	.	I	I	V	Y	P	D	A	G	H	A	F	N	A	D	Y	R	P	S	Y	H	A	A	S
Query Conservation		.	.	.	.	.	.	.	.	.																.	.	.	.	.	.																										.	.
Alig confidence		.	.	.	.	.	.	.	.	.																.	.	.	.	.	.																										.	.															.	.	.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.	.	.
Template Sequence		Y	R	Q	L	L	S	L	Y	K	I	Y	C	G	K	E	I	E	V	L	N	I	Y	G	D	L	E	D	G	S	H	S	D	G	R	V	S	N	S	S	S	Q	S	L	Q	Y	L	L	R	G	S	T	K	S	Y	Q	E	X	K	F	K	G	A	K	A	Q	H	S	Q	L	H	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T	T	T	G	G	G	G	S	T	T	S													S	S	S	S	B	S	S	S	S	B						T							S			S									S	G	G	G	S	T	T	G	G	G	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	D	G	W	Q	R	M	L	E	W	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	D	V	A	N	E	I	I	Q	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions