Job Description P56262 Confidence 99.95% Date Thu Jan 5 12:06:23 GMT 2012 Rank 37 Aligned Residues 225 % Identity 16% Template c3ed1E_ PDB info PDB header:hydrolase receptor Chain: E: PDB Molecule:gibberellin receptor gid1; PDBTitle: crystal structure of rice gid1 complexed with ga3 Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.
Predicted Secondary structure																																		.																		.	.	.	.	.																.
Query SS confidence																																		.																		.	.	.	.	.																.
Query Sequence		I	V	Q	T	P	D	D	A	I	V	A	G	F	T	S	I	P	S	Q	G	D	N	M	P	A	Y	H	A	R	P	K	Q	.	S	D	G	P	L	P	V	V	I	V	V	Q	E	I	F	G	V	.	.	.	.	.	H	E	H	I	R	D	I	C	R	R	L	A	L	E	G	.	Y	L	A	I	A	P	E	L	Y
Query Conservation																																		.																		.	.	.	.	.																.
Alig confidence																							.											.																		.	.	.	.	.																.
Template Conservation																							.
Template Sequence		A	N	A	R	P	L	E	G	V	S	S	F	D	H	I	I	D	Q	S	V	G	.	L	E	V	R	I	Y	R	A	D	A	P	A	A	E	P	F	P	V	I	I	F	F	H	G	G	S	F	V	H	S	S	A	S	S	T	I	Y	D	S	L	C	R	R	F	V	K	L	S	K	G	V	V	V	S	V	N	Y	R
Template Known Secondary structure				S	S		B	T	T	B									T	T	T	T	.													S	S											S	T	T	T	S			T	T	B															T	S
Template Predicted Secondary structure																							.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	E	G	D	P	N	D	F	A	D	I	P	T	L	L	S	G	L	V	A	K	V	P	D	S	Q	V	L	A	D	L	D	H	V	A	S	W	A	S	R	N	G	G	D	V	H	R	L	M	I	T	G	F	C	W	G	G	R	I	T	W	L	Y	A	A	H	N	P	Q	L	K	A	A	V	A	W	Y	G	K
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Sequence		R	A	P	E	H	R	Y	P	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	D	D	G	W	T	A	L	K	W	V	M	S	Q	.	P	F	M	R	S	A	Q	A	R	V	F	L	S	G	D	S	S	G	G	N	I	A	H	H	V	A	V	R	A	A	D	E	G	V	K	V	C	G	N	I	L
Template Known Secondary structure			T	T	T	S		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.														T		.	T	T	T	B				B																								T	T				S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template SS confidence
		156	.	.	.	160	.	.	.	.															.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.																																										.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	G	D	K	S	L	N	S	P	K	Q	P	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	T	D	L	N	A	P	I	L	G	L	Y	G	G	Q	D	N	S	I	P	Q	E	S
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.
Template Conservation																																																																															.	.
Template Sequence		L	N	A	M	F	G	G	T	E	R	T	E	S	E	R	R	L	D	G	K	Y	F	V	T	L	Q	D	R	D	W	Y	W	K	A	Y	L	P	E	D	A	D	R	D	H	P	A	C	N	P	F	G	P	N	G	R	R	L	G	G	L	P	F	A	K	S	L	I	I	V	S	G	L	D	L	T	C	D	.	.	R
Template Known Secondary structure									S	S									T	T	T	S	S														S		T	T			T	T	S	T	T	T		T	T	S	T	T					T	T	S											T	T	S	T	T			.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	T	M	R	Q	A	L	R	A	A	N	A	K	A	E	I	I	V	Y	P	D	A	G	H	A	F	N	A	D	Y	R	P	S	Y	H	A	A	S	A	E	D	G	W	Q	R	M	L	E	W	F	K	Q	Y	G
Query Conservation
Alig confidence																																.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		Q	L	A	Y	A	D	A	L	R	E	D	G	H	H	V	K	V	V	Q	C	E	N	A	T	V	G	F	Y	L	L	.	.	.	.	P	N	T	V	H	Y	H	E	V	M	E	E	I	S	D	F	L	N	A	N	L
Template Known Secondary structure												T	T									T	T			T	T	G	G	G	S	.	.	.	.	S		S																	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.					.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions