Job Description P56262 Confidence 99.13% Date Thu Jan 5 12:06:23 GMT 2012 Rank 216 Aligned Residues 202 % Identity 15% Template c3ds8A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.				.	.	.	.	.	90	.	.	.	.	.							.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.												.	.	.	.	.	.
Query SS confidence																												.	.	.												.	.	.	.	.	.
Query Sequence		V	I	V	V	Q	E	I	F	G	V	H	E	H	I	R	D	I	C	R	R	L	A	L	E	G	Y	.	.	.	L	A	I	A	P	E	L	Y	F	R	E	.	.	.	.	.	.	G	D	P	N	D	F	A	D	I	P	T	L	L	S	G	L	V	A	K	V	P	D	S	Q	V	L	A	D	L	D	H	V	A	S
Query Conservation																												.	.	.												.	.	.	.	.	.
Alig confidence																												.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		I	I	L	I	H	G	S	G	G	N	A	S	S	L	D	K	X	A	D	Q	L	X	N	E	Y	R	S	S	N	E	A	L	T	X	T	V	N	S	E	G	K	I	K	F	E	G	K	L	T	K	D	A	K	R	P	I	I	K	F	G	F	E	Q	N	Q	A	T	P	D	D	W	S	K	W	L	K	I	A	X	E
Template Known Secondary structure								T	T			T	T	T	T										T	T													T	T	T						S				T	T		S	S								S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180																		.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	A	S	R	N	G	G	D	V	H	R	L	M	I	T	G	F	C	W	G	G	R	I	T	W	L	Y	A	A	H	N	P	Q	.	.	.	.	.	.	L	K	A	A	V	A	W	Y	G	K	L	T	G	D	K	S	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	K	Q	P	V
Query Conservation																																			.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																									.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		D	L	K	S	R	Y	G	F	.	T	Q	X	D	G	V	G	H	S	N	G	G	L	A	L	T	Y	Y	A	E	D	Y	A	G	D	K	T	V	P	T	L	R	K	L	V	A	I	G	S	P	F	N	D	L	D	P	N	D	N	G	X	D	L	S	F	K	K	L	P	N	S	T	P	Q	X	D	Y	F	I	K	N
Template Known Secondary structure										.	S								T													S	T	T		T	T	S										S			T	T		S							S		T	T		S	S		S	S											T
Template Predicted Secondary structure										.
Template SS confidence
		86	.	.	.	90	.	.	.		.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																									.	.
Query SS confidence																		.	.	.	.	.	.																									.	.
Query Sequence		D	I	A	T	D	L	N	A	P	I	L	G	L	Y	G	G	.	.	.	.	.	.	Q	D	N	S	I	P	Q	E	S	V	E	T	M	R	Q	A	L	R	A	A	N	A	K	A	.	.	E	I	I	V	Y	P	D	A	G	H	A	F	N	A	D	Y	R	P	S	Y	H	A	A	S	A	E	D	G	W	Q	R	M
Query Conservation																		.	.	.	.	.	.																									.	.
Alig confidence																		.	.	.	.	.	.																									.	.																		.	.	.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	E	V	S	P	D	L	E	V	L	A	I	A	G	E	L	S	E	D	N	P	T	D	G	I	V	P	T	I	S	S	L	A	T	R	L	F	X	P	G	S	A	K	A	Y	I	E	D	I	Q	V	G	E	D	A	V	H	Q	T	L	H	E	T	P	.	.	.	.	.	.	.	.	.	K	S	I	E	K	T
Template Known Secondary structure		G	G	G	S		T	T										S	B	T	T	B		B		S	S	S	B					T	G	G	G	G	T	S	B	T	T	B	S									S	G	G	G		G	G	G	G	G	G	S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.										230	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	W	F	K	Q	Y	G	G	K	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	W	F	L	E	K	F	K	T	D	E	T
Template Known Secondary structure							T				S	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions