Job Description P56262 Confidence 99.91% Date Thu Jan 5 12:06:23 GMT 2012 Rank 81 Aligned Residues 237 % Identity 14% Template c3d0kA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative poly(3-hydroxybutyrate) depolymerase lpqc; PDBTitle: crystal structure of the lpqc, poly(3-hydroxybutyrate) depolymerase2 from bordetella parapertussis Resolution 1.83 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																						.																																							.
Query SS confidence																						.																																							.
Query Sequence		S	T	I	V	Q	T	P	D	D	A	I	V	A	G	F	T	S	I	P	S	.	Q	G	D	N	M	P	A	Y	H	A	R	P	K	Q	S	D	G	P	L	P	V	V	I	V	V	Q	E	I	F	G	V	H	E	H	I	R	D	I	.	C	R	R	L	A	L	E	G	Y	L	A	I	A	P	E	L	Y	F	R	E
Query Conservation																						.																																							.
Alig confidence																						.																																							.
Template Conservation
Template Sequence		A	D	R	I	A	L	E	L	G	H	A	G	R	N	A	I	P	Y	L	D	N	A	D	R	P	F	T	L	N	T	Y	R	P	Y	G	Y	T	P	D	R	P	V	V	V	V	Q	H	G	V	L	R	N	G	A	D	Y	R	D	F	W	I	P	A	A	D	R	H	K	L	L	I	V	A	P	T	F	S	D	E	I
Template Known Secondary structure									S	S	S	S											T	T											T	T			T	T	S									T	T										T								T										T	T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		G	D	P	N	D	F	A	D	I	P	T	L	L	S	G	L	V	A	K	V	P	D	S	Q	V	.	.	L	A	D	L	D	H	V	A	S	W	A	S	R	N	G	G	D	V	H	R	L	M	I	T	G	F	C	W	G	G	R	I	T	W	L	Y	A	A	H	N	P	Q	L	K	A	A	V	A	W	Y	G	K	L
Query Conservation																											.	.
Alig confidence																											.	.
Template Conservation
Template Sequence		W	P	G	V	E	S	Y	N	N	G	R	A	F	T	A	A	G	N	P	R	H	V	D	G	W	T	Y	A	L	V	A	R	V	L	A	N	I	R	A	A	E	I	A	D	C	E	Q	V	Y	L	F	G	H	S	A	G	G	Q	F	V	H	R	L	X	S	S	Q	P	H	A	P	F	H	A	V	T	A	A	N	P
Template Known Secondary structure		S						T	T	T	T	T		B		T	T	S		B			G	G	G	S	T	T													T	T	S				S	S							T													S		S	T	T		S						S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		174	.												.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																						210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	G	.	.	.	.	.	.	.	.	.	.	.	D	K	S	L	N	S	P	K	Q	P	V	D	I	A	T	D	L	N	A	P	I	L	G	L	Y	G	G	Q	D	N	S	I	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	V	E	T	M	R	Q	A	L	R	A
Query Conservation				.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	W	Y	T	L	P	T	F	E	H	R	F	P	E	G	L	D	G	V	G	L	T	E	D	H	L	A	R	L	L	A	Y	P	X	T	I	L	A	G	D	Q	D	I	A	T	P	N	L	P	S	E	P	A	A	L	R	Q	G	P	H	R	Y	A	R	A	R	H	Y	Y	E	A	G	Q	R	A	A	A	Q	R	G
Template Known Secondary structure		S	S				S	S	T	T	S	B	T	T	T	S	S	B	T	T	T												S								T	T							S			S					T	T		S	S																				T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	A	K	A	E	I	I	V	Y	P	D	A	G	H	A	F	N	A	D	Y	R	P	S	Y	H	A	A	S	A	E	D	G	W	Q	R	M	L	E	W	F	K	Q	Y	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	F	G	W	Q	L	Q	V	V	P	G	I	G	H	D	G	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	X	S	Q	V	C	A	S	L	W	F	D	G	R	X
Template Known Secondary structure												T	T			S			.	.	.	.	.	.	.	.	.	.	.	.													T	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270													.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions