Job Description P56262 Confidence 100.00% Date Thu Jan 5 12:06:23 GMT 2012 Rank 5 Aligned Residues 225 % Identity 15% Template c1z68A_ PDB info PDB header:lyase Chain: A: PDB Molecule:fibroblast activation protein, alpha subunit; PDBTitle: crystal structure of human fibroblast activation protein alpha Resolution 2.60 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50			.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																									.	.																					.	.	.	.	.
Query SS confidence																									.	.																					.	.	.	.	.
Query Sequence		I	V	A	G	F	T	S	I	P	S	Q	G	D	N	M	P	A	Y	H	A	R	P	K	.	.	Q	S	D	G	P	L	P	V	V	I	V	V	Q	E	I	F	G	V	H	E	.	.	.	.	.	H	I	R	D	I	C	R	R	L	A	L	E	G	Y	L	A	I	A	P	E	L	Y	F	R	E	G	D	P	N	D
Query Conservation																									.	.																					.	.	.	.	.
Alig confidence																									.	.																					.	.	.	.	.
Template Conservation
Template Sequence		P	K	E	E	I	K	K	L	E	V	D	E	I	T	L	W	Y	K	M	I	L	P	P	Q	F	D	R	S	K	K	Y	P	L	L	I	Q	V	Y	G	G	P	C	S	Q	S	V	R	S	V	F	A	V	N	W	I	S	Y	L	A	S	K	E	G	M	V	I	A	L	V	D	G	R	G	T	A	F	Q	G	D	K
Template Known Secondary structure												T	T											T	T			S	S	S												T	T	B																		T	T										T	T	B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		F	A	D	I	P	T	L	L	S	G	L	V	A	K	V	P	D	S	Q	V	L	A	D	L	D	H	V	A	S	W	A	S	R	N	G	G	D	V	H	R	L	M	I	T	G	F	C	W	G	G	R	I	T	W	L	Y	A	A	H	N	P	Q	L	K	A	A	V	A	W	Y	G	K	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.
Template Sequence		L	L	Y	A	V	.	.	.	.	.	.	Y	R	K	L	G	V	Y	E	V	E	D	Q	I	T	A	V	R	K	F	I	E	M	G	F	I	D	E	K	R	I	A	I	W	G	W	S	Y	G	G	Y	V	S	S	L	A	L	A	S	G	T	G	L	F	K	C	G	I	A	V	A	P	V	S	S	W	E	Y	Y	A
Template Known Secondary structure				G	G	G	.	.	.	.	.	.	T	T		T	T																T	T	S													T											T	T	S	S	S			S						S					T	T	T	S	B
Template Predicted Secondary structure							.	.	.	.	.	.
Template SS confidence
		584	.	.	.	.							.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
														173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	L	T	G	D	K	S	L	N	S	P	K	Q	P	V	D	I	A	T	D	L	N	.	A	P	I	L	G	L	Y	G	G	Q	D	N	S	I	P	Q	E	S	V	E	T	M	R	Q	A	L	R	A	A	N	A	K	A	E	I	I	V	Y	P	D	A	G	H	A	F	N
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																						.																																														.
Template Conservation																																																																																	.
Template Sequence		S	V	Y	T	E	R	F	M	G	L	P	T	K	D	D	N	L	E	H	Y	K	N	S	T	V	M	A	R	A	E	Y	F	R	N	V	D	Y	L	L	I	H	G	T	A	D	D	N	V	H	F	Q	N	S	A	Q	I	A	K	A	L	V	N	A	Q	V	D	F	Q	A	M	W	Y	S	D	Q	N	H	G	L	.
Template Known Secondary structure												S	S	T	T	T	T							T		S	G	G	G	G	G	G	G	T	T	S								T	T		S	S	S		T													T	T									T	T			T	T		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	Y	R	P	S	Y	H	A	A	S	A	E	D	G	W	Q	R	M	L	E	W	F	K	Q	Y	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	S	G	L	S	T	N	H	L	Y	T	H	M	T	H	F	L	K	Q	C	F
Template Known Secondary structure		.	.	.	.	.	.	.		T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									737	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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