Job Description P56262 Confidence 99.43% Date Thu Jan 5 12:06:23 GMT 2012 Rank 209 Aligned Residues 181 % Identity 17% Template c1pjaA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor; PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2) Resolution 2.70 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.			.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		P	L	P	V	V	I	V	V	Q	E	I	F	G	V	H	E	H	I	R	D	I	C	R	R	L	A	L	E	.	.	G	Y	L	A	I	A	P	E	L	Y	F	R	E	G	D	P	N	D	F	A	D	I	P	T	L	L	S	G	L	V	A	K	V	P	D	S	Q	V	L	A	D	L	D	H	V	A	S	W	A	S
Query Conservation																														.	.
Alig confidence																														.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Y	K	P	V	I	V	V	H	G	L	F	D	S	S	Y	S	F	R	H	L	L	E	Y	I	N	E	T	H	P	G	T	V	V	T	V	L	D	L	F	D	G	R	E	S	L	R	P	L	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	V	Q	G	F	R	E	A	V	V	P	I	M	A
Template Known Secondary structure												T	T			G	G	G	G											S	T	T								S	S		S	G	G	G	G	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.																.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	N	G	G	D	V	H	R	L	M	I	T	G	F	C	W	G	G	R	I	T	W	L	Y	A	A	H	N	P	Q	L	K	A	A	V	A	W	Y	G	K	L	T	G	D	K	S	L	N	S	P	K	Q	P	V	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.
Template Sequence		K	A	P	.	.	.	Q	G	V	H	L	I	C	Y	S	Q	G	G	L	V	C	R	A	L	L	S	V	M	D	D	H	N	V	D	S	F	I	S	L	S	S	P	Q	M	G	Q	Y	G	D	T	D	Y	L	K	W	L	F	P	T	S	M	R	S	N	L	Y	R	I	C	Y	S	P	W	G	Q	E	F	S	I	C
Template Known Secondary structure				T	.	.	.	T								T														T	T										S			T	T		B		S										T	T											T	S	T	T	G	G	G	S	T	G	G
Template Predicted Secondary structure					.	.	.
Template SS confidence
		100	.	.				.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
																																																							188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	T	D	L	N	A	P	I	L	G	L	Y	G	G	Q	D	N	S	I	P	Q	E	S	V	E	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	Y	W	H	D	P	H	H	D	D	L	Y	L	N	A	S	S	F	L	A	L	I	N	G	E	R	D	H	P	N	A	T	V	W	R	K	N	F	L	R	V	G	H	L	V	L	I	G	G	P	D	D	G	V	I	T	P	W	Q	S	S	F	F	G	F	Y	D	A	N	E	T	V	L	E	M	E	E	Q	L	V
Template Known Secondary structure		G	G	B			T	T										S	S					T	T	S	S			T	T									T	T		S								T	T		S	S	S	S	S	G	G	G	G	G	T					T	T						G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		215	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		M	R	Q	.	.	.	.	.	.	A	L	R	A	A	N	A	K	A	E	I	I	V	Y	P	D	A	G	H	A	F	N	A	D	Y	R	P	S	Y	H	A	A	S	A	E	D	G	W	Q	R	M	L	E	W	F
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.								.																	.	.	.	.	.									.	.	.
Template Conservation																		.																	.	.	.	.	.									.	.	.
Template Sequence		Y	L	R	D	S	F	G	L	K	T	L	L	A	R	G	A	.	I	V	R	C	P	M	A	G	I	S	H	T	A	W	H	S	.	.	.	.	.	N	R	T	L	Y	E	T	C	.	.	.	I	E	P	W	L
Template Known Secondary structure				T	T	T	T	S							T	T		.							S	S			T	T	T	T	T	S	.	.	.	.	.									.	.	.	T	G	G	G
Template Predicted Secondary structure																		.																	.	.	.	.	.									.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.				.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions