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Job DescriptionP76403
Confidence93.97%DateThu Jan 5 12:22:42 GMT 2012
Rank189Aligned Residues85
% Identity27%Templated1pama4
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20. . ....... 30.........40... ......50.........60.
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Query Sequence  GTLKNMRYAFA. . Y. . . . GADAVYA. . . . . . . . . . . . . . . . . . . . . . GQPRYSLRVRNNEF. NHENLQLGINEAHALGKK
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Template Sequence  GDWQGIINKINDGYLTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIK
Template Known Secondary structure 

TTTTGGGT








TT

TTS
S
TTT

TT
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   52.......60.........70.........80.........90.........100.........110.........120.........130.
 
   62..... ..70........
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Query Sequence  FYVVVN. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IAPHNAKLKTF
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Template Sequence  VIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYL
Template Known Secondary structure 
TT

SS
TTSTTTT
TT
STT
TT

B

S
B


SSSBSTTB
TTS
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   132.......140.........150.........160.........170.........180.........190.........200.........210.
 
   7980.........90.....
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Query Sequence  IRDLKPVVEMGPDALIM
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Template Sequence  KDAIKMWLDLGVDGIRV
Template Known Secondary structure  TT

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   212.......220........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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