Return to main results Retrieve Phyre Job Id

Job DescriptionP76403
Confidence82.82%DateThu Jan 5 12:22:42 GMT 2012
Rank391Aligned Residues87
% Identity21%Templated1lwha2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution2.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.. .......30.........40.. .......50.........60........
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Query Sequence  PAGTLKNMRYAFAY. . . . GADAVYAGQPRYSLRVRNNE. . . . . . . . . . . FNHENLQLGINEAHALGKKFYVVVNI. . . . .
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Template Sequence  GVGDFRGLKNAVSYLKELGIDFVWLMPVFSSISFHGYDVVDFYSFKAEYGSEREFKEMIEAFHDSGIKVVLDLPIHHTGF
Template Known Secondary structure  SS

TTT
S



SSSS

S
S
GGG

TT

TTB

T
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   18.20.........30.........40.........50.........60.........70.........80.........90.......
 
   6970.........80.......
Predicted Secondary structure  .............................................................


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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . APHNAKLKTFIRDLKPVVE
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Template Sequence  LHTWFQKALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVLHLLD
Template Known Secondary structure  TSTT
TTB
B

TT

TT
B
SSS

B

TTS

TT
TTS
BB
TTS
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   98.100.........110.........120.........130.........140.........150.........160.........170.......
 
   88.90.....
Predicted Secondary structure 



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Query Sequence  MGPDALIM
Query Conservation   






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Template Sequence  MGVDGFRF
Template Known Secondary structure  T

Template Predicted Secondary structure 



Template SS confidence 







   178.180.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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