Return to main results Retrieve Phyre Job Id

Job DescriptionP76403
Confidence90.45%DateThu Jan 5 12:22:42 GMT 2012
Rank287Aligned Residues105
% Identity20%Templated1gvia3
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution3.3

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  GTLKNMRYAFAY. . . . GADAVYA. . . . . . . . . . GQPRYSLRVRNNEF. NHENLQLGINEAHALGKKFYV. . VVN. . . . . .
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Template Sequence  GDLQGIIDHLDYLADLGITGIYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGIRVMLDAVFNHCGYEF
Template Known Secondary structure 

TT





BS
SSSSTTS
S
TTSB
TTT

T


SB

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   173......180.........190.........200.........210.........220.........230.........240.........250..
 
   68.70.........80...... ...90........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IAPHNAKLKTFIRDLKPVV. EMGPDALIMSDP. .
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Template Sequence  APFQDVLKNGAASRYKDWFHIREFPLQTEPRPNYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVANE
Template Known Secondary structure  GGG
TTGGGB
BSSSS


SSS
SB
BSSS
TTSBBB
TTSS


TTGGG
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   253......260.........270.........280.........290.........300.........310.........320.........330..
 
   99100.........110.....
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Query Sequence  . . . . . . . GLIMLVREHFPEMPIHL
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Template Conservation                        

Template Sequence  IDHQFWREFRQAVKALKPDVYILG
Template Known Secondary structure  S

TT
Template Predicted Secondary structure 




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   333......340.........350......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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