Job Description P76403 Confidence 74.34% Date Thu Jan 5 12:22:42 GMT 2012 Rank 460 Aligned Residues 131 % Identity 20% Template c3qi7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution Resolution 1.86 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60													.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Query Sequence		N	H	E	N	L	Q	L	G	I	N	E	A	H	A	L	G	K	.	.	.	.	.	.	.	.	.	.	.	.	K	F	Y	V	V	V	N	I	A	P	H	N	A	K	L	K	T	F	I	R	D	L	K	P	V	V	E	M	G	P	D	A	L	I	M	S	D	.	.	.	.	.	P	G	L	I	M	L	V	R	E
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Conservation
Template Sequence		N	K	V	Q	Y	N	X	V	E	E	X	A	K	E	Y	E	E	E	N	K	I	D	K	T	K	V	K	Q	T	I	K	H	V	V	L	P	E	N	F	T	S	N	I	D	S	A	I	N	K	I	V	K	L	A	D	D	K	E	V	Q	A	I	V	V	S	T	D	Q	A	G	L	L	P	A	L	Q	K	V	K	E
Template Known Secondary structure																				T	T																	T	T	G	G	G	G										G	G	G	G		T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		107	.	.	110	.																			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.								140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		H	F	P	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	I	H	L	S	V	Q	A	N	A	V	N	W	A	T	V	K	F	W	Q	Q	M	G	L	T	R	V	I	.	.	.	.	.	.	.	L	S	R	E	L	S	L	E	E	I	E	E	I	R	N	Q	V	P	D	M	E	I
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	R	P	E	I	I	T	I	S	A	P	X	G	D	D	K	N	Q	L	S	Q	F	V	D	V	N	L	G	V	S	A	E	E	R	G	K	V	L	A	E	R	S	K	E	X	G	A	K	A	F	I	H	Y	A	S	T	D	D	L	K	D	V	N	I	A	K	R	L	E	X	I	K	E	T	C	K	N	I	G	L
Template Known Secondary structure				T	T	S					S	S			S									S	S																					T	T		S								T	T	G	G	G	S																	T	T
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	F	V	H	G	A	L	C	M	A	Y	S	G
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		P	.	F	V	Q	V	N	T	P	N	I	N	T	E
Template Known Secondary structure			.										S	S	T
Template Predicted Secondary structure			.
Template SS confidence
		214		.	.	.	.	.	220	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions