|   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | P | A | G | T | L | K | N | M | R | Y | A | F | A | Y | G | A | D | A | V | Y | A | G | Q | P | R | Y | S | L | R | V | R | N | N | E | F | N | H | E | N | L | Q | L | G | I | N | E | A | H | A | L | G | K | . |
. |
. |
K | F | Y | V | V | V | N | I | A | P | H | N | A | K | L | K | T | F | I | R | D | L | K | P |
Query Conservation |   |
|
|
|
|   |
|
|   |
|   |
|
|
|   |   |
|
|
|
|
|
|   |
|   |   |   |
|   |   |
|   |   |
|   |
|
|
|   |
|
|
|   |
|   |
|   |   |
|
|   |   |
|   | . | . | . |
|
|
|
|
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
Template Conservation |   |
|
|
|   |   |   |
|   |   |   |   |
|   |   |
|
|
|   |
|
|   |   |
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|   |   |
|   |   |
| . | . | . | . | . | . | . |   |   |   |
Template Sequence |   |
G | T | V | C | T | A | D | D | F | Q | K | A | I | D | A | G | A | Q | F | I | V | S | P | G | L | T | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
P | E | L | I | E | K | A | K | Q | V | K | L | D | G | Q | W | Q | G | V | F | L | P | G | V | A | T | A | S | E | . |
. |
. |
. |
. |
. |
. |
V | X | I |
Template Known Secondary structure |   |
 |
|
|
| S |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |  | S | S |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S |
|
|
|  |  |  |  |  |  |
| S |  |  |  | . | . | . | . | . | . | . |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . | . | . |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
69 | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | |
|
|
|
|
|
|
. | . | . |
  |
  |   |
85 | . | . | . | . | 90 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . |
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
Query Sequence |   |
V | V | E | M | G | P | D | A | L | I | M | S | D | . |
. |
. |
. |
. |
. |
P | G | L | I | M | L | V | R | E | H | F | P | E | M | P | I | H | L | S | V | Q | A | N | A | V | N | W | A | T | V | K | F | W | Q | Q | M | G | L | T | R | V | I | L | S | R | E | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
S | L | E | E | I |
Query Conservation |   |
|   |   |   |
|
|
|
|
|
|
|   |
| . | . | . | . | . | . |   |
|   |
|   |
|   |
|
|   |   |
|   |
|   |
|
|   |
|
|
|   |
|
|   |
|   |   |
|   |   |
|   |   |   |   |
|   |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |   |
|
|
|
|
|
|   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |
|   |   |
|   |
|
|
|
|
|
|   |   |   |
| . | . | . |   |   |   |   |
|   |
|
|
|   |   |
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
Template Sequence |   |
A | A | Q | A | G | I | T | Q | L | K | C | F | P | A | S | A | I | G | G | A | K | L | L | K | A | W | S | G | P | F | P | D | I | Q | F | C | P | T | G | G | I | S | K | D | N | . |
. |
. |
Y | K | E | Y | L | G | L | P | N | V | I | C | A | G | G | S | W | L | T | E | S | K | L | L | I | E | G | D | W | N | E | V |
Template Known Secondary structure |   |
 |  |  | T | T |
|
|  |  |  |  | T | T | T | T | T | T | T |  |  |  |  |  |  |  |  |  | T | T |
| T | T |
|  |  |  |  | B | S | S |
|
| T | T | T | . | . | . |  |  |  |  |  |  | S | T | T | B |
|
|  |  |  | S | G | G | G |
|  |  |  |  |  |  | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
127 | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
|
|
. | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |
  |
  |   |
150 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
E | E | I | R | N | Q | V |
Query Conservation |   |
  |   |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
Template Sequence |   |
T | R | R | A | S | E | I |
Template Known Secondary structure |   |
 |  |  |  |  |  | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
204 | . | . | . | . | . | 210 |
  |