Job Description P76403 Confidence 97.42% Date Thu Jan 5 12:22:42 GMT 2012 Rank 17 Aligned Residues 159 % Identity 19% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		L	L	S	P	A	G	T	L	K	N	M	R	Y	A	F	A	Y	G	A	D	A	V	Y	A	G	Q	P	R	Y	S	L	R	V	R	N	N	E	F	N	H	E	N	L	Q	L	G	I	N	E	A	H	A	L	G	K	K	F	Y	V	.	.	.	V	V	N	I	A	P	H	N	A	K	L	K	T	F	I	R	D	L
Query Conservation																																																													.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.																									.	.	.											.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template Sequence		I	I	P	A	A	H	N	Q	K	D	M	E	K	I	L	E	L	D	L	T	Y	M	V	M	.	.	.	.	.	.	.	.	.	.	.	L	E	T	H	V	A	Q	L	K	A	L	V	K	Y	A	Q	A	G	G	K	K	V	L	L	H	A	D	L	V	N	G	L	K	N	D	D	Y	.	.	.	.	.	.	A	I
Template Known Secondary structure							S	S	S							T	T	S	S							.	.	.	.	.	.	.	.	.	.	.		S			T	T	T											T	T							G	G	G			T				S			.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.												.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70							.	.
		83	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		K	P	V	V	E	.	M	G	P	D	A	L	I	M	S	D	P	G	L	I	M	L	V	R	E	H	F	P	E	M	P	I	H	L	S	V	Q	A	N	A	V	N	W	A	T	V	K	F	W	Q	Q	M	G	L	T	R	V	I	L	S	R	E	L	S	L	E	E	I	E	E	I	R	N	Q	V	P	D	M	E	I
Query Conservation							.
Alig confidence							.																																																																						.
Template Conservation																																																																													.
Template Sequence		D	F	L	C	T	E	I	C	P	D	G	I	I	S	T	R	G	N	A	I	M	K	A	K	Q	H	K	M	L	A	I	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	C	I	E	L	L	P	G	I	I	P	E	Q	V	Q	K	M	T	Q	K	L	.	H	I	P	V
Template Known Secondary structure							T	T			S					S											T	T											S																	S							T	T													.
Template Predicted Secondary structure																																																																													.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.
															162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	F	V	H	G	A	L	C	M	A	Y	S	G	R	C	L	L	S	G	Y
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	G	G	L	I	E	T	S	E	Q	V	N	Q	V	I	A	S	G	A	I	A	V	T	T	S	N	K	H	L	W	E	G	H
Template Known Secondary structure					S	S			S									T	T	T									G	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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