 |
Job Description | P76403 | Confidence | 82.04% | Date | Thu Jan 5 12:22:42 GMT 2012 |
Rank | 401 | Aligned Residues | 77 |
% Identity | 16% | Template | c2pcqA_ |
PDB info |
PDB header:lyase | Chain: A: PDB Molecule:putative dihydrodipicolinate synthase; |
PDBTitle: crystal structure of putative dihydrodipicolinate synthase (ttha0737)2 from thermus thermophilus hb8
|
Resolution | 2.10 Å |
|
 |
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | K | N | M | R | Y | A | F | A | Y | G | A | D | A | V | Y | A | G | Q | P | R | Y | S | L | R | V | R | N | N | E | F | N | H | E | N | L | Q | L | G | I | N | E | A | H | A | L | G | K | K | F | Y | V | V | V | N | I | A | P | H | N | A | K | L | K | T | F | I | R | D | L | K | P | V | V | E | M | G | P | D | A |
Query Conservation |   |
|
|   |
|   |
|
|
|   |   |
|
|
|
|
|
|   |
|   |   |   |
|   |   |
|   |   |
|   |
|
|
|   |
|
|
|   |
|   |
|   |   |
|
|   |   |
|   |
|
|
|
|
|
|
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |
|   |   |
|
|   |
|
|   |
|   |
|
|
| . | . | . | . |
|
|   |   |   |
|
|   |   |
|
|   |   |
|
|   |   |   | . |   |   |   |   |
|
|
|   |
|
|   |   |   |
|
|   |   |   |
|   |   |
| . | . | . | . |   |   |
|   |   |   |
|   |   |   |
Template Sequence |   |
F | R | E | L | A | Q | A | L | E | P | L | V | D | G | L | L | V | Y | G | S | N | . |
. |
. |
. |
G | E | G | V | H | L | T | P | E | E | R | A | R | G | L | R | A | L | . |
R | P | R | K | P | F | L | V | G | L | X | E | E | T | L | P | Q | A | E | G | A | L | . |
. |
. |
. |
L | E | A | K | A | A | G | A | X | A |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | G | G | G | S | S |
|
|  |  | T |
| T | T | . | . | . | . | T | T | G | G | G | S |
|  |  |  |  |  |  |  |  |  | T |
| . |
|
| S | S |
|
|  |  |  |  |
|
| S | S |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  | T |
| S |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
| . | . | . | . |
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
21 | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | |
|
|
|
. | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | |
60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | |
|
|
|
. | . | . | . | . | . | . | . | 90 | . |
  |
  |   |
93 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
L | I | M | S | D | P |
Query Conservation |   |
|
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|
Template Sequence |   |
L | L | A | T | P | P |
Template Known Secondary structure |   |
 |  |  |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
  |   |
92 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|