Job Description P76403 Confidence 91.64% Date Thu Jan 5 12:22:42 GMT 2012 Rank 268 Aligned Residues 113 % Identity 12% Template c2dh3A_ PDB info PDB header:transport protein, signaling protein Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain; PDBTitle: crystal structure of human ed-4f2hc Resolution 2.80 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.																			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Query Sequence		K	N	M	R	Y	A	F	A	Y	G	A	D	A	V	Y	A	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	R	Y	S	L	R	V	R	N	N	E	F	N	H	E	N	L	Q	L	G	I	N	E	A	H	A	L	G	K	K	F	Y	V	V	V	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.
Template Sequence		G	R	L	D	Y	L	S	S	L	K	V	K	G	L	V	L	G	P	I	H	K	N	Q	K	D	D	V	A	Q	T	D	L	L	Q	I	D	P	N	F	G	.	.	.	.	.	.	.	.	S	K	E	D	F	D	S	L	L	Q	S	A	K	K	K	S	I	R	V	I	L	D	L	T	P	N	Y	R	G	E	N	S
Template Known Secondary structure		G	G						T	T	T														T	T		S	T	T								T	T	T		.	.	.	.	.	.	.	.															T	T									T	T	T	T	S	S	S	T
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.									.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
			67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.												100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure		.																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	N	I	A	P	H	N	A	K	L	K	T	F	I	R	D	L	K	P	V	V	E	M	G	P	D	A	L	I	M	S	D	P	G	.	.	.	.	.	.	.	.	.	.	.	L	I	M	L	V	R	E	H	F	P	E	M	P	I	H	L	S	V	Q	A	N	A	V	N	W	A	T	V	K	F	W	Q	Q	M	G
Query Conservation		.																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																		.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																																	.	.
Template Sequence		W	F	S	T	Q	V	D	T	V	A	T	K	V	K	D	A	L	E	F	W	L	Q	A	G	V	D	G	F	Q	V	R	D	I	E	N	L	K	D	A	S	S	F	L	A	E	W	Q	N	I	T	K	G	F	S	E	D	R	L	L	I	A	G	T	.	.	N	S	S	D	L	Q	Q	I	L	S	L	L	E	S	N
Template Known Secondary structure		T	S	S	S			T																T	T									G	G	G	S	T	T																	S	S								.	.	S												T	S
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		135	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	D
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		295	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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