Job Description P76403 Confidence 97.40% Date Thu Jan 5 12:22:42 GMT 2012 Rank 18 Aligned Residues 173 % Identity 15% Template c1yadD_ PDB info PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis Resolution 2.10 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.				.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.
Query SS confidence																																																			.	.	.
Query Sequence		P	A	G	T	L	K	N	M	R	Y	A	F	A	Y	G	A	D	A	V	Y	A	G	Q	P	R	Y	S	L	R	V	R	N	N	E	F	N	H	E	N	L	Q	L	G	I	N	E	A	H	A	.	.	.	L	G	K	K	F	Y	V	V	V	N	I	A	P	H	N	A	K	L	K	T	F	I	R	D	L	K	P	V
Query Conservation																																																			.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.																				.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	E	E	L	A	R	I	I	I	T	I	Q	N	E	V	D	F	I	H	I	.	.	.	.	.	.	.	.	.	R	E	R	S	K	S	A	A	D	I	L	K	L	L	D	L	I	F	E	G	G	I	D	K	R	K	L	V	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	V	D	I	A
Template Known Secondary structure														G	G	G		S					.	.	.	.	.	.	.	.	.			T	T	S															T	T			G	G	G					.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.										.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.															.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																	.																																													.
Query SS confidence																	.																																													.
Query Sequence		V	E	M	G	P	D	A	L	I	M	S	D	P	G	L	.	I	M	L	V	R	E	H	F	P	E	M	P	I	H	L	S	V	Q	A	N	A	V	N	W	A	T	V	K	F	W	Q	Q	M	G	L	T	R	V	I	L	S	R	E	L	.	S	L	E	E	I	E	E	I	R	N	Q	V	P	D	M	E	I	E	I
Query Conservation																	.																																													.
Alig confidence																	.																	.	.	.	.																									.														.	.	.
Template Conservation																																		.	.	.	.																																							.	.	.
Template Sequence		L	F	S	T	I	H	R	V	Q	L	P	S	G	S	F	S	P	K	Q	I	R	A	R	F	P	H	L	H	I	G	R	S	.	.	.	.	V	H	S	L	E	E	A	V	Q	A	E	K	E	D	A	D	Y	V	L	F	G	H	V	F	R	G	V	S	L	L	S	D	I	K	Q	R	I	S	.	.	.	I	P	V
Template Known Secondary structure			T	T	T								T	T	S											T	T							.	.	.	.			S										T	T		S																							.	.	.	S
Template Predicted Secondary structure																																		.	.	.	.																																							.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	H	G	A	L	C	M	A	Y	S	G	R	C	L	L	S	G	Y	I	N	K	R	D	P	N	Q	G	T	C	T	N	A	C	R	W	E	Y	N	V	Q	E	G	K	E	D	D	V	G	N	I	V	H	K	Y	E	P	I	P	V	Q	N	V	E	P	T	L	G	I	G	A	P	T	D	K	V	F	M	I	E
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	I	G	G	M	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S			G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	Q	R	P	G	E	Y	M	T	A	F	E	D	E	H	G	T	Y	I	M	N	S	K	D	L	R	A	I	A	H	V	E	R	L	T	K	M	G	V	H	S	L	K	I	E	G	R	T	K	S	F	Y	Y	C	A	R	T	A	Q	V	Y	R	K	A	I	D	D	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	R	L	R	D	V	K	Q	A	G	A	D	G	I	A	V	M	S	G	I	F	S	S	A	E	P	L	E	A	A	R	R	Y	S	R	K	L	K	E	M
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G							T	T		S					S					T	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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