Job Description P0AFS9 Confidence 100.00% Date Thu Jan 5 11:27:10 GMT 2012 Rank 3 Aligned Residues 203 % Identity 21% Template c3nyyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative glycyl-glycine endopeptidase lytm; PDBTitle: crystal structure of a putative glycyl-glycine endopeptidase lytm2 (rumgna_02482) from ruminococcus gnavus atcc 29149 at 1.60 a3 resolution Resolution 1.60 Å

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		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.													.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	E	V	S	A	V	I	K	A	M	Q	W	Q	M	D	F	R	K	L	K	K	G	D	E	F	A	V	L	M	S	R	E	M	L	D	G	K	R	E	Q	S	Q	L	L	G	V	R	L	R	S	E	G	K	D	Y	Y	A	I	R	A	E	D	G	K	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	D	R
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	F	Q	R	L	Q	K	P	V	V	S	Q	P	D	F	R	R	Q	P	V	S	E	T	X	Q	V	Y	L	K	Q	A	A	D	P	G	R	D	V	G	L	Y	W	X	A	T	D	F	E	N	R	R	F	P	G	K	V	S	P	S	G	F	Q	K	L	Y	R	Q	W	R	N	Q	T	G	W	D	A	Y	V	Q
Template Known Secondary structure								T	S		S	T	T	S																	T	T		S	S													T	T	T	T	S				S		S	S												T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.					.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.																																				.	.	.	.
Query SS confidence																	.	.	.	.	.																																				.	.	.	.
Query Sequence		N	G	T	G	L	A	K	G	F	L	R	F	P	T	A	.	.	.	.	.	K	Q	F	R	I	S	S	N	F	N	P	R	R	T	N	P	V	T	G	R	V	A	P	H	R	G	V	D	F	A	M	P	Q	G	T	.	.	.	.	P	V	L	S	V	G	D	G	E	V	V	V	A	K	R	S	G	A	A	G	Y
Query Conservation																	.	.	.	.	.																																				.	.	.	.
Alig confidence																	.	.	.	.	.											.																									.	.	.	.
Template Conservation																																.
Template Sequence		S	C	R	A	I	W	N	D	V	K	Y	F	P	I	P	Q	S	L	D	D	T	E	D	K	I	S	Y	V	D	S	.	W	X	F	E	R	N	Y	G	G	K	R	G	H	E	G	T	D	I	X	A	E	K	N	T	P	G	Y	Y	P	V	V	S	X	T	D	G	V	V	T	E	K	G	W	L	E	K	G	G	W
Template Known Secondary structure								T	T			S		S	S				S	S	S	S										.						T	T		S		T	T									S	S			T	T		S					S	S											T	T	T
Template Predicted Secondary structure																																.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.								390	.	.	.	.	.	.	.	.	.	400					.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																						.																								.	.	.	.	.	.	.												.	.	.	.
Query SS confidence																						.																								.	.	.	.	.	.	.												.	.	.	.
Query Sequence		Y	V	A	I	R	H	G	R	S	Y	T	T	R	Y	M	H	L	R	K	I	.	L	V	K	P	G	Q	K	V	K	R	G	D	R	I	A	L	S	G	N	T	G	R	S	.	.	.	.	.	.	.	T	G	P	H	L	H	Y	E	V	W	I	.	.	.	.	N	Q	Q	A	V	N	P	L	T	A	K
Query Conservation																						.																								.	.	.	.	.	.	.												.	.	.	.
Alig confidence																						.																								.	.	.	.	.	.	.												.	.	.	.
Template Conservation
Template Sequence		R	I	G	I	T	A	P	T	G	A	Y	F	Y	Y	A	H	L	D	S	Y	A	E	L	E	K	G	D	P	V	K	A	G	D	L	L	G	Y	X	G	D	S	G	Y	G	E	E	G	T	T	G	E	F	P	V	H	L	H	L	G	I	Y	L	K	E	G	T	E	E	I	S	V	N	P	Y	P	V	L
Template Known Secondary structure								T	T	S									S				S			T	T					T	T							B				S	S	S	T	T				S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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