Job Description P0AFS9 Confidence 35.30% Date Thu Jan 5 11:27:10 GMT 2012 Rank 105 Aligned Residues 88 % Identity 23% Template c3n7xA_ PDB info PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: crystal structure of penaeus stylirostris densovirus capsid Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure																																												.								.	.
Query SS confidence																																												.								.	.
Query Sequence		N	P	R	R	T	N	P	V	T	G	R	V	A	P	H	R	G	V	D	F	A	M	P	Q	G	T	P	V	L	S	V	G	D	G	E	V	V	V	A	K	R	S	.	G	A	A	G	Y	Y	V	.	.	A	I	R	H	G	R	S	Y	T	T	R	Y	M	H	L	R	K	I	L	V	K	P	G	Q	K	V	K	R
Query Conservation																																												.								.	.
Alig confidence																								.														.	.	.				.								.	.
Template Conservation																								.														.	.	.
Template Sequence		G	D	R	K	A	Y	T	I	H	G	D	T	R	N	W	Y	G	G	E	I	P	T	.	T	G	P	T	F	I	P	K	W	G	G	Q	I	.	.	.	K	W	D	K	P	S	L	G	N	L	V	Y	P	A	D	H	H	T	N	D	W	Q	Q	I	F	M	R	M	S	P	I	K	G	P	N	G	D	E	L	K	L
Template Known Secondary structure		T												S	S				S				S	.	S	S		B	B		S			B	T	T	B	.	.	.			B			T	T	S							S	S																B		T	T	S		B
Template Predicted Secondary structure																								.														.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	R	I	A	L	S	G	N	T	G	R	S	T	G	P	H	L	H	Y	E	V	W
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.
Template Sequence		G	C	R	V	Q	A	D	F	F	.	.	.	.	.	.	.	.	L	H	L	E	V	R
Template Known Secondary structure											.	.	.	.	.	.	.	.
Template Predicted Secondary structure											.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.	.	.	.	.	.	290									.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions