Job Description P0AFS9 Confidence 83.42% Date Thu Jan 5 11:27:10 GMT 2012 Rank 43 Aligned Residues 96 % Identity 20% Template c2aujD_ PDB info PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.					.
Predicted Secondary structure																			.																																				.	.																					.	.	.	.
Query SS confidence																			.																																				.	.																					.	.	.	.
Query Sequence		R	V	A	P	H	R	G	V	D	F	A	M	P	Q	G	T	P	.	V	L	S	V	G	D	G	E	V	V	V	A	K	R	S	G	A	A	G	Y	Y	V	A	I	R	H	G	R	S	Y	T	T	R	Y	M	.	.	H	L	R	K	I	L	V	K	P	G	Q	K	V	K	R	G	D	R	I	A	.	.	.	.	L
Query Conservation																			.																																				.	.																					.	.	.	.
Alig confidence																			.																	.	.																		.	.																					.	.	.	.
Template Conservation																																				.	.
Template Sequence		K	E	A	Y	R	P	G	E	V	L	A	E	L	S	E	P	Y	L	F	R	A	E	E	S	G	V	V	E	L	K	D	L	A	E	.	.	G	H	L	I	Y	L	R	Q	E	E	E	V	V	A	R	Y	F	L	P	A	G	M	T	P	L	V	V	E	G	E	I	V	E	V	G	Q	P	L	A	E	G	K	G	L
Template Known Secondary structure			S				T	T							S	S		B			B		S	S										T	T	.	.									T	T																S		T	T					T	T		B
Template Predicted Secondary structure																																				.	.
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.			.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		383	.	.	.	.	.	.	390										.	.	.	.	.	.		.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.							.
Query SS confidence										.	.	.	.	.	.	.	.	.							.
Query Sequence		S	G	N	T	G	R	S	T	.	.	.	.	.	.	.	.	.	G	P	H	L	H	Y	.	E	V	W	I	N	Q	Q	A	V	N	P
Query Conservation										.	.	.	.	.	.	.	.	.							.
Alig confidence										.	.	.	.	.	.	.	.	.							.
Template Conservation
Template Sequence		L	R	L	P	R	H	M	T	A	K	E	V	E	A	E	E	E	G	D	S	V	H	L	T	L	F	L	E	W	T	E	P	K	D	Y
Template Known Secondary structure						T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions