Job Description P23877 Confidence 8.91% Date Thu Jan 5 11:40:15 GMT 2012 Rank 9 Aligned Residues 249 % Identity 15% Template c3k3gA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:urea transporter; PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea Resolution 2.40 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		P	R	V	L	M	A	L	L	I	G	A	A	L	G	V	S	G	A	I	F	Q	S	L	M	R	N	P	L	G	S	P	D	V	M	G	F	N	T	G	A	W	S	G	V	L	V	A	M	V	L	F	G	Q	D	L	T	A	I	A	L	S	A	M	V	G	G	I	V	T	S	L	L	V	W	L	L	A	W	.	.
Query Conservation																																																																																.	.
Alig confidence																																.								.															.	.																								.	.
Template Conservation																																.								.															.	.
Template Sequence		T	T	L	G	V	C	A	V	L	G	T	A	A	S	T	L	T	A	Q	L	L	G	V	D	K	P	L	V	R	A	.	G	L	F	G	F	N	G	.	T	L	A	G	I	A	L	P	F	F	F	N	Y	E	.	.	P	A	M	L	G	Y	V	A	L	N	G	A	F	T	T	I	I	M	A	S	L	L	N	F	L
Template Known Secondary structure																							T								T	.	T	T	T	T				.											B				.	.	T	T
Template Predicted Secondary structure																																.								.															.	.
Template SS confidence
		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.		.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
			139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.													.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	R	N	G	I	D	T	F	R	L	I	I	I	G	I	G	V	R	A	M	L	V	A	F	N	T	W	L	L	L	.	.	.	.	.	.	.	.	.	.	.	.	K	A	S	L	E	T	A	L	T	A	G	L	W	N	A	G	S	L	N	G	L	T	W	A	K	T	S	P	S	A	P	I	I	I	L	M	L	I
Query Conservation		.																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	W	G	V	P	A	L	T	A	P	F	V	L	A	T	W	L	L	M	F	G	V	Y	K	L	S	L	F	H	P	G	A	L	I	A	P	A	L	P	S	V	D	M	G	T	V	T	G	R	T	F	M	E	G	L	F	K	G	V	G	E	V	M	F	Q	D	N	I	V	T	G	V	I	F	V	V	A	I	L
Template Known Secondary structure		G	G	G	T				T	T												G	G	G	G	T		T	T	S		B		T	T																												G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		206	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		A	A	A	L	L	V	R	R	M	R	L	L	E	.	.	M	G	D	D	T	A	C	A	L	G	V	S	V	E	R	S	R	L	L	M	M	L	V	A	V	V	L	T	A	A	A	T	A	L	A	G	P	I	S	F	I	A	L	V	A	P	H	I	A	R	R	I	S	G	T	A	R	W	G	L	T	Q	A	A	L
Query Conservation															.	.
Alig confidence															.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	S	R	I	S	A	L	F	A	V	I	G	S	L	V	G	L	C	T	A	L	I	M	H	S	P	E	T	P	V	R	L	G	L	Y	G	F	N	S	V	L	C	G	I	A	M	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	F	Y	L	N	I	R	T	F	L	Y	A	L
Template Known Secondary structure																									T	T								T	T	T	T	T											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	B			S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.																		.	.	.	.	.	260	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	A	L	L	L	L	A	A	D	L	C	A	Q	Q	L	F	M	P	Y	Q	L	P	V	G	V	V	T	V	S	L	G	G	I	Y	L	I	V	L	L	I	Q	E	S	R	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	C	M	V	L	G	A	I	A	T	G	A	F	S	V	L	L	S	P	I	G	M	P	A	L	T	W	P	F	I	V	V	T	W	L	F	L	F	A	G	S	M	F	R	N	I	A
Template Known Secondary structure																		T	G	G	G	T				T	T														G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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