Phyre 2 alignment of P06721 with c3tqxA

Job Description P06721
Confidence 99.97% Date Wed Jan 25 15:20:11 GMT 2012

Rank 54 Aligned Residues 310

% Identity 14% Template c3tqxA_

PDB info PDB header:transferase Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase; PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii

Resolution 2.30 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60				.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence	V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	.	.	.	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	G	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I	E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P	S	Q
Query Conservation																							.	.	.
Alig confidence															.								.	.	.
Template Conservation															.
Template Sequence	I	K	T	A	Q	T	V	V	E	Q	Y	G	F	G	.	X	A	S	V	R	F	I	C	G	T	Q	T	I	H	K	E	L	E	K	D	I	S	E	F	L	G	T	D	D	T	I	L	Y	S	S	C	F	D	A	N	G	G	L	F	E	T	L	L	G	P	E	D	A	I	I	S	D	E	L	N	H	A	S	I	I
Template Known Secondary structure													S		.			S																							T		S						S								T	T							T	T							T	T
Template Predicted Secondary structure															.
Template SS confidence
	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

	116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.							.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence	D	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	I	G	A	D	I	V	K	H	L	Q	.	.	.	.	.	.	P	N	T	K	I	V	F	L	E	S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	S	V	V	P	D	A	I	I	M	I	D	N	T	W	A
Query Conservation																															.	.	.	.	.	.
Alig confidence				.	.	.	.																								.	.	.	.	.	.																																.	.
Template Conservation				.	.	.	.																																																													.	.
Template Sequence	D	G	I	.	.	.	.	R	L	C	K	A	Q	R	Y	R	Y	K	N	N	A	X	G	D	L	E	A	K	L	K	E	A	D	E	K	G	A	R	F	K	L	I	A	T	D	G	V	F	S	X	D	G	I	I	A	D	L	K	S	I	C	D	L	A	D	K	Y	.	.	N	A	L	V	X	V	D	D	S	H	A
Template Known Secondary structure				.	.	.	.		S			S							T	T		T	T											T	T	T		S	S							S			T	T	T	T															T	.	.	T								T	T	T
Template Predicted Secondary structure				.	.	.	.																																																													.	.
Template SS confidence
	139	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.

	190	.	.	.	.	.	.	.	.										.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.			.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																																								.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																																								.	.
Query Sequence	A	G	V	L	F	K	A	L	D	.	.	.	.	.	.	.	.	.	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	.	.	Y	L	M	G	Q	M	V	D	A	D	T	A	Y	I	T	S	R	G	L	R	T
Query Conservation										.	.	.	.	.	.	.	.	.																																								.	.
Alig confidence										.	.	.	.	.	.	.	.	.													.	.	.																									.	.
Template Conservation																															.	.	.
Template Sequence	V	G	F	I	G	E	N	G	R	G	T	P	E	Y	C	G	V	A	D	R	V	D	I	L	T	G	T	L	G	K	.	.	.	A	L	G	G	A	S	G	G	Y	T	S	G	H	K	E	I	I	E	W	L	R	N	R	S	R	P	Y	L	F	S	N	T	V	A	P	V	I	V	A	T	S	L	K	V	L	E	L
Template Known Secondary structure	T	T	T	S	S	T	T	S								T		T	T			S						S	S	S	.	.	.	S	S		S	S																								S	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
	213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F	S	M	A	Y
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template Sequence	L	K	T	E	G	P	Q	L	R	K	Q	L	Q	E	N	S	R	Y	F	R	A	G	X	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	G	F	Q	L	V	P	G	N	H	P	I	I	P	V	X	L	G	.	.	.	D	A	Q	L	A	T	N	X	A	D	H	L	L	Q	E	G	I	Y	V
Template Known Secondary structure				T																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T			B				S	S	S								.	.	.															T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.
Template SS confidence
	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.																.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R	I
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	V	G	F	S	Y	P	V	V	P	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	A	R	I	R	V	Q	X	S	A	V	H	T	Q	Q	Q	L	D	R	A	I	E	A	F	G	Q	V
Template Known Secondary structure					T	T	T	S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	352	.	.	.	.	.	.	.	360	.																			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions