Job Description P06721 Confidence 99.90% Date Wed Jan 25 15:20:11 GMT 2012 Rank 189 Aligned Residues 317 % Identity 15% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.								.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.												.																.	.	.	.	.	.	.
Query SS confidence																							.												.																.	.	.	.	.	.	.
Query Sequence		I	Q	R	A	S	S	L	V	F	D	S	V	E	A	K	K	H	A	T	R	N	.	R	A	N	G	E	L	F	Y	G	R	R	.	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	.	.	.	.	.	.	.	E	G	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I
Query Conservation																							.												.																.	.	.	.	.	.	.
Alig confidence																							.												.				.	.	.										.	.	.	.	.	.	.
Template Conservation																																							.	.	.
Template Sequence		T	L	L	D	D	K	G	K	I	I	A	L	P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	A	S	Y	A	P	I	E	G	E	K	.	.	.	D	Y	R	K	I	V	I	D	T	L	F	G	P	Y	K	P	E	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R	S	A	I	F	S	Y	L
Template Known Secondary structure				B		T	T	S		B												T	S		G	G	G	T	S	S				T	T				.	.	.												G	G	G			S	S								S													T	S
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.											.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.			.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.																					.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.																					.	.
Query Sequence		E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P	S	Q	D	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	.	.	.	.	.	.	.	.	.	.	I	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	.	.	P	G	S	I	T	M	E	V	H	D	V
Query Conservation																																							.	.	.	.	.	.	.	.	.	.																					.	.
Alig confidence																	.	.	.	.																			.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																	.	.	.	.
Template Sequence		D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P	.	.	.	.	Y	R	K	I	C	E	E	F	G	R	N	F	K	T	F	E	F	F	T	D	D	F	A	F	N	I	D	V	Y	K	E	A	I	D	E	G	I	R	D	S	D	R	I	A	S	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D
Template Known Secondary structure			S	S							S	S			T		.	.	.	.									T									B		S	S	S	S	B															S		S									S	S		T	T	T
Template Predicted Secondary structure																	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.					.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		167	.	.	170	.	.	.	.		.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.													.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure										.				.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence										.				.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		P	A	I	V	A	A	V	R	.	S	V	V	.	.	.	.	.	.	P	D	A	I	I	M	I	D	N	T	W	A	A	G	V	L	F	K	A	L	D	F	G	I	.	.	.	.	.	.	.	.	.	.	.	.	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	.
Query Conservation										.				.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence										.				.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.												.														.
Template Conservation																																																																			.
Template Sequence		E	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F	F	E	K	F	S	N	L	P	R	N	L	F	V	V	V	A	F	S	X	S	K	S	H	.	T	A	Y	G	L	R	S	G	A	A	V	G	I	S
Template Known Secondary structure									T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T	T	G	G	G	S	S			T	T														.	T		G	G	G
Template Predicted Secondary structure																																																																			.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.
								227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																	.	.	.	.	.																																	.	.	.	.
Template Conservation																																								.	.	.	.	.																																	.	.	.	.
Template Sequence		S	S	K	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	.	.	.	.	.	E	N	K	K	I	Y	E	Q	E	L	V	D	L	R	N	X	L	K	S	R	A	D	V	F	V	T	A	A	K	E	N	K	.	.	.	.	L
Template Known Secondary structure		S																				T	S	S							T	T	T	S	S	T	T	S	G	.	.	.	.	.	G	G	T	T																												T	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.																																	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.						.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.					.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.				.
Predicted Secondary structure																																																																														.	.	.
Query SS confidence																																																																														.	.	.
Query Sequence		K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	.	.	.	L
Query Conservation																																																																														.	.	.
Alig confidence																		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	X	I	P	Y	F	G	G	F	F	T	F	I	P	T	D	.	.	.	K	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	K	G	I	R	V	A	I	C	G	V	G	E
Template Known Secondary structure								S	S	S							S	.	.	.											T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S						S	T	T	S		T
Template Predicted Secondary structure																		.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.				.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.																														380	.	.	.	.	.	.	.	.	.	390	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	I	P	K	L	V	Q	R	L	A	F	Y	T	N	K
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions