Job Description P06721 Confidence 99.91% Date Wed Jan 25 15:20:11 GMT 2012 Rank 177 Aligned Residues 312 % Identity 12% Template c3qguB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii Resolution 1.55 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																																									.	.
Query SS confidence																																									.	.
Query Sequence		V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	G	G	.	.	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I	E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P	S	Q	D
Query Conservation																																									.	.
Alig confidence																																									.	.														.																							.	.	.
Template Conservation																																																								.																							.	.	.
Template Sequence		A	K	A	A	A	G	L	A	T	R	E	G	Y	S	G	Y	G	A	E	Q	G	Q	G	A	L	R	E	A	V	A	S	T	F	Y	G	H	A	G	R	A	A	D	E	I	F	I	S	D	G	S	K	C	D	I	.	A	R	I	Q	M	M	F	G	S	K	P	T	V	A	V	Q	D	P	S	Y	P	V	.	.	.
Template Known Secondary structure								G	G	G	S						S	S		T	T															T	T	T	T			G	G	G					S							.									S	S	S							S			T		.	.	.
Template Predicted Secondary structure																																																								.																							.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.													.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																																					.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.																																					.
Query Sequence		F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	I	G	A	.	.	.	.	.	.	.	.	.	.	.	.	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	.	S	V	V	P	D	A	I	I	M
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																																					.
Alig confidence		.																						.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation		.
Template Sequence		.	Y	V	D	T	S	V	M	M	G	M	T	G	D	H	N	G	T	G	F	D	G	I	E	Y	M	V	C	N	P	D	N	H	F	F	P	D	L	S	K	A	K	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R	A	Q	L	T	E	L	V	N	F	A	R	K	N	G	S	I	L	V
Template Known Secondary structure		.								T	T		S			B		S	S	S	B	T	T								G	G	G	T	T				T	T	S					S						S	S		T	T	T																				T
Template Predicted Secondary structure		.
Template SS confidence
			168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		184	.	.	.	.	.										190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.									.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Query Sequence		I	D	N	T	W	A	.	.	.	.	.	.	.	.	.	A	G	V	L	F	K	A	L	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	.	.	.	.	.	.	.	.	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A
Query Conservation								.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																								.																.	.	.	.	.	.	.	.
Template Conservation																																								.
Template Sequence		Y	D	A	A	Y	A	L	Y	I	S	N	P	D	C	P	K	T	I	Y	E	I	P	G	A	D	E	V	A	I	E	T	C	S	F	S	K	Y	A	.	G	F	T	G	V	R	L	G	W	T	V	V	P	K	A	L	K	Y	A	N	G	E	P	V	H	A	D	W	N	R	V	M	T	T	C	F	N	G	A	S	N
Template Known Secondary structure					T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T								S	G	G	G	.	T		T	T										T	T		B		T	T	S		B												S
Template Predicted Secondary structure																																								.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Sequence		I	V	Q	A	G	G	L	A	C	L	Q	P	E	G	L	.	.	.	.	.	.	.	.	.	K	E	M	N	A	M	I	K	F	Y	K	E	N	A	Q	I	L	K	T	T	F	T	E	M	G	.	.	.	.	F	S	V	Y	G	G	D	D	A	P	Y	I	W	V	G	F	P	G	K	P	S	W	D	V	F	A	E
Template Known Secondary structure											T	S					.	.	.	.	.	.	.	.	.																								T	T	.	.	.	.						S	S	S	S	S							T	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340										.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.					.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	.	.	E	D	V	D	D	L	I	A	D	L	D	A	G	F
Query Conservation																																																					.	.
Alig confidence						.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation						.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	L	E	R	.	.	.	C	N	I	V	T	T	P	G	S	G	Y	G	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	G	F	V	R	A	S	A	F	G	S	R	E	N	I	L	E	A	V	R	R	F	K	E	A	Y
Template Known Secondary structure						.	.	.								G	G	G	G		G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T								S
Template Predicted Secondary structure						.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		393	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410																				.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions