Job Description P06721 Confidence 99.96% Date Wed Jan 25 15:20:11 GMT 2012 Rank 90 Aligned Residues 303 % Identity 12% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

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		54	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.															.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure								.																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	Y	G	R	R	.	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	G	G	.	.	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P	S	Q	D
Query Conservation								.																			.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.				.	.	.													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.
Template Sequence		R	N	Y	G	G	L	D	G	I	V	.	.	.	D	I	R	Q	I	W	A	D	L	L	G	V	P	V	E	Q	V	L	A	G	D	A	S	S	L	N	I	X	F	D	V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	V	K	W	I	C	P	V	P	G	Y	D	R	H	F	S
Template Known Secondary structure		T	S	S			S	S				.	.	.											T	S		G	G	G					S	S																			T	T		S	S		G	G	G	S	S									S
Template Predicted Secondary structure												.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.			.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																							.	.																		.	.
Query SS confidence																					.	.	.	.																							.	.																		.	.
Query Sequence		F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	.	.	.	.	I	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	P	G	.	.	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	.	.	S	V	V	P	D	A	I	I	M	I	D	N	T	W
Query Conservation																					.	.	.	.																							.	.																		.	.
Alig confidence				.	.	.	.														.	.	.	.																							.	.																		.	.
Template Conservation				.	.	.	.
Template Sequence		I	T	.	.	.	.	E	R	F	G	F	E	X	I	S	V	P	X	N	E	D	G	P	D	X	D	A	V	E	E	L	V	K	N	P	Q	V	K	G	X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R	V	V	W	D	N	A	Y
Template Known Secondary structure				.	.	.	.			T	T										T	T											T	T	S	T	T									S	S		T	T	T																		S	S	T	T								T	T
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		148	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		189	190	.	.	.	.	.	.	.	.	.															200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	G	V	L	F	K	A	L	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D	T	A	Y	I	T	S	R
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation																																									.	.
Template Sequence		A	V	H	T	L	T	D	E	F	P	E	V	I	D	I	V	G	L	G	E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L	.	.	A	G	A	G	V	S	F	F	L	T	S	A	E	N	R	K	W	Y	T	G	H	A	G	I	R	G	I	G	P	N	K	V	N	Q	L	A	H	A	R
Template Known Secondary structure		T	T		B	S	S	S															T	T		T	T								S	T	T	T	S		.	.	T	T	T	S																							S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.			.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F
Query Conservation
Alig confidence																		.	.	.																															.	.	.																									.	.	.	.
Template Conservation																		.	.	.																															.	.	.																									.	.	.	.
Template Sequence		Y	F	G	D	A	E	G	V	R	A	V	X	R	K	H	A	.	.	.	A	S	L	A	P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A	Q	W	T	V	P	A	.	.	.	G	G	Y	F	I	S	L	D	V	V	P	G	T	A	S	R	V	A	E	L	A	K	E	A	.	.	.	.
Template Known Secondary structure					S													.	.	.																			G	G	G	T								S	.	.	.	B	S	S							S	T	T												T	.	.	.	.
Template Predicted Secondary structure																		.	.	.																															.	.	.																									.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.				.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.				.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R	I
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		G	I	A	L	T	G	A	G	S	S	Y	P	L	R	Q	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	K	N	L	R	L	A	P	S	L	P	P	V	E	E	.	.	.	.	L	E	V	A	X	D	G	V
Template Known Secondary structure		T						T	T	T	T	S	G	G	G			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S								S	S	S					.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.																.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.					.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions