Job Description P06721 Confidence 99.76% Date Wed Jan 25 15:20:11 GMT 2012 Rank 229 Aligned Residues 315 % Identity 14% Template c3oksB_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis Resolution 1.80 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																							.	.	.																							.	.
Query SS confidence																																							.	.	.																							.	.
Query Sequence		V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	.	.	.	G	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	.	.	I	E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P
Query Conservation																																							.	.	.																							.	.
Alig confidence																		.	.																				.	.	.																							.	.
Template Conservation																		.	.
Template Sequence		V	E	A	V	R	S	Q	V	G	D	F	T	H	T	C	F	.	.	M	V	T	P	Y	E	G	Y	V	A	V	C	E	Q	L	N	R	L	T	P	V	R	G	D	K	R	S	A	L	F	N	S	G	S	E	A	V	E	N	A	V	K	I	A	R	S	H	T	H	K	P	A	V	V	A	F	D	H	A	Y	H	G
Template Known Secondary structure										T	T		S			T	T	.	.	T	T	S																S	S			S	S							S	S																									T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		114	.	.	.	.	.	120	.																													.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Query Sequence		S	Q	D	F	C	S	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	K	L	G	V	T	T	S	W	F	D	P	L	I	G	A	D	I	V	K	H	L	.	.	.	.	.	Q	P	N	T	K	I	V	F	L	E	S	P	G	S	I	T
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		R	T	N	L	T	M	A	L	T	A	K	V	M	P	Y	K	D	G	F	G	P	F	A	P	E	I	Y	R	A	P	L	S	Y	P	F	R	D	A	E	F	G	K	E	L	A	T	D	G	E	L	A	A	K	R	A	I	T	V	I	D	K	Q	I	G	A	D	N	L	A	A	V	V	I	E	P	I	Q	G	E	G
Template Known Secondary structure		S	S											T	T	T	T	T	T			S			S	S													G	G	G						T																	T		G	G	G								S	S	B	T	T	T
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		161	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure							.	.	.	.																								.	.	.	.
Query SS confidence							.	.	.	.																								.	.	.	.
Query Sequence		M	E	V	H	D	.	.	.	.	V	P	A	I	V	A	A	V	R	S	V	V	P	D	A	I	I	M	I	D	N	T	W	.	.	.	.	A	A	G	V	L	F	K	A	L	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q
Query Conservation							.	.	.	.																								.	.	.	.
Alig confidence							.	.	.	.												.	.											.	.	.	.																													.	.	.
Template Conservation																						.	.																																											.	.	.
Template Sequence		G	F	I	V	P	A	D	G	F	L	P	T	L	L	D	W	C	R	K	N	.	.	D	V	V	F	I	A	D	E	V	Q	T	G	F	A	R	T	G	A	M	F	A	C	E	H	E	G	I	D	P	D	L	I	V	T	A	G	I	A	G	G	L	P	.	.	.	L	S	A	V	T	G	R	A	E	I	M	D	S
Template Known Secondary structure		T		B				T	T												T	.	.	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	T	T	T				S							T	T	T	T	S	S	.	.	.												T
Template Predicted Secondary structure																						.	.																																											.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.	.	.	310	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S
Query Conservation
Alig confidence																															.	.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		P	H	V	S	G	L	G	G	T	Y	G	G	N	P	I	A	C	A	A	A	L	A	T	I	E	T	I	E	S	.	.	E	G	L	V	A	R	A	Q	Q	I	E	K	I	M	K	D	R	L	G	R	L	Q	A	E	D	D	R	I	G	D	V	.	.	.	.	.	.	.	.	.	.	R	G	R	G	A	M	I	A
Template Known Secondary structure		S		T	T	S	S			S	S	S	S																		.	.	T	T																								T	T					.	.	.	.	.	.	.	.	.	.				T	T
Template Predicted Secondary structure																															.	.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.											.	.	.	.	.	.	.	380
		313	.	.	.	.	.	.					320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.
Query SS confidence									.	.	.	.
Query Sequence		F	V	L	K	K	K	L	.	.	.	.	N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	E	D	V	D	D	L	I	A	D	L	D
Query Conservation									.	.	.	.
Alig confidence									.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	E	L	V	K	A	G	T	T	E	P	D	A	D	L	T	K	A	L	C	A	G	A	H	A	A	G	V	I	V	L	S	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Y	G	N	V	V	R	F	L	P	P	L	S	I	G	D	D	L	L	N	E	G	L
Template Known Secondary structure					B	S	T	T	S			B															T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S									T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.																								.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		389	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	F	A	R	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	V	L	E	E	V	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		438	.	440	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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