Job Description P06721 Confidence 99.94% Date Wed Jan 25 15:20:11 GMT 2012 Rank 117 Aligned Residues 318 % Identity 11% Template c3mc6C_ PDB info PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 Resolution 3.15 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.																						.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.																						.	.	.	.	.	.	.	.
Query Sequence		V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	G	G	A	.	.	.	.	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I	E	.	.	.	.	.	.	.	.	Q	G	D	H	V	L	M
Query Conservation																																										.	.	.	.																						.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	I	A	Y	E	K	Y	C	V	A	N	Q	L	H	P	D	V	F	P	A	V	R	K	M	E	S	E	V	V	S	M	V	L	R	M	F	N	A	P	S	D	T	G	C	G	T	T	T	S	G	G	T	E	S	L	L	L	A	C	L	S	A	K	M	Y	A	L	H	H	R	G	I	T	E	P	E	I	I	A
Template Known Secondary structure									T	S	S		B	T	T		T	T	T																			T	T			T	T	T							S	S																				S			S	S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																															.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.
Query Sequence		T	N	T	A	Y	E	P	S	Q	D	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	.	.	.	.	.	.	I	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	S	V	V	P	D	A
Query Conservation																															.	.	.	.	.	.
Alig confidence									.	.	.	.																			.	.	.	.	.	.																																										.	.
Template Conservation									.	.	.	.																																																																		.	.
Template Sequence		P	V	T	A	H	A	G	.	.	.	.	F	D	K	A	A	Y	Y	F	G	M	K	L	R	H	V	E	L	D	P	T	T	Y	Q	V	D	L	G	K	V	K	K	F	I	N	K	N	T	V	L	L	V	G	S	A	P	N	F	P	H	G	I	A	D	D	I	E	G	L	G	K	I	A	Q	K	Y	.	.	K	L
Template Known Secondary structure			T	T	S				.	.	.	.								S									B		T	T	T		S	B		T	T	T	T	G	G	G			S	S								T	T		T	T	T					S		T	T	T	T	T					T	.	.	T
Template Predicted Secondary structure									.	.	.	.																																																																		.	.
Template SS confidence
		264	.	.	.	.	.	270					.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.														.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	I	M	I	D	N	T	W	A	A	G	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	A	L	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																																																					.
Template Sequence		P	L	H	V	D	S	C	L	G	S	F	I	V	S	F	M	E	K	A	G	Y	K	N	L	P	L	L	D	F	R	V	P	G	V	T	S	I	S	C	D	T	H	K	Y	G	F	A	P	K	G	S	.	S	V	I	M	Y	R	N	S	D	L	R	M	H	Q	Y	Y	V	N	P	A	W	T	G	G	L	Y	G	S
Template Known Secondary structure							T	T	T	T					G	G	G	T	T	T	T			S					S	T	T	S	T	T								T	T	T	T	T				S	S		.						S	S					T	T	T	S			B	T	T		T	T	S		B
Template Predicted Secondary structure																																																					.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.		.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure														.																																			.
Query SS confidence														.																																			.
Query Sequence		T	A	Y	I	T	S	R	G	L	R	T	L	.	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	.	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A
Query Conservation														.																																			.
Alig confidence														.																																			.											.	.	.
Template Conservation																																																												.	.	.
Template Sequence		P	T	L	A	G	S	R	P	G	A	I	V	V	G	C	W	A	T	M	V	N	M	G	E	N	G	Y	I	E	S	C	Q	E	I	V	G	A	A	M	K	F	K	K	Y	I	Q	E	N	I	P	D	L	D	I	M	G	N	P	.	.	.	R	Y	S	V	I	S	F	S	S	K	T	L	N	I	H	E	L	S	D
Template Known Secondary structure		S	S	S		S	S		B																																								S		T	T					S			.	.	.		S	S							T	T	T	T
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.				.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.				.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		N	Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	.	.	.	E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R	I
Query Conservation																																																						.	.	.
Alig confidence							.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation							.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	S	K	K	.	.	.	.	G	W	H	F	N	A	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	P	V	A	L	H	M	A	F	T	R	L	S	A	H	V	V	D	E	I	C	D	I	L	R	T	T	V	Q	E	L
Template Known Secondary structure					T	T	.	.	.	.	T		B						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S									T	T	T	T		T
Template Predicted Secondary structure							.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		494	.	.	.	.					.	500	.	.	.	.	.	.																									.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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