Job Description P06721 Confidence 99.81% Date Wed Jan 25 15:20:11 GMT 2012 Rank 223 Aligned Residues 313 % Identity 13% Template c3lv2A_ PDB info PDB header:transferase Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic2 acid synthase in complex with substrate analog sinefungin Resolution 2.18 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.									100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																									.	.	.	.	.	.	.	.
Query SS confidence																																							.	.																									.	.	.	.	.	.	.	.
Query Sequence		V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	.	.	G	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I	E	.	.	.	.	.	.	.	.	Q	G	D	H	V	L	M	T	N
Query Conservation																																							.	.																									.	.	.	.	.	.	.	.
Alig confidence																		.	.																				.	.																									.	.	.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence		D	Q	A	L	T	T	Q	L	R	V	M	N	H	V	M	F	.	.	G	G	L	T	H	E	P	A	A	R	L	A	K	L	L	V	D	I	T	P	A	G	L	D	T	V	F	F	S	D	S	G	S	V	S	V	E	V	A	A	K	M	A	L	Q	Y	W	R	G	R	G	L	P	G	K	R	R	L	M	T	W	R
Template Known Secondary structure													S				S	.	.	S	S																	S	S	T	T								S	S																		T	T	T		T	T								T
Template Predicted Secondary structure																		.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.																					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.											.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.											.	.
Query Sequence		T	A	Y	E	P	S	Q	D	F	C	S	K	I	L	S	K	L	G	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	W	F	D	P	L	I	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	.	P	G	S	I	T	M	E	V	H	D	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.											.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.											.	.
Template Conservation
Template Sequence		G	G	Y	H	G	D	T	F	L	A	M	S	I	C	D	P	H	G	G	M	H	S	L	W	T	D	V	L	A	A	Q	V	F	A	P	Q	V	P	R	D	Y	D	P	A	Y	S	A	A	F	E	A	Q	L	A	Q	H	A	G	E	L	A	A	V	V	V	E	P	V	V	Q	G	A	G	G	M	R	F	H	D	P
Template Known Secondary structure		T					S	S					T	T	S		T	T	T	T	T	G	G	G	T		S	S	S											S	S																	G	G	G								S	S				T	T	T						T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
				166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.					.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																								.	.	.	.
Query SS confidence		.	.																								.	.	.	.
Query Sequence		.	.	V	P	A	I	V	A	A	V	R	S	V	V	P	D	A	I	I	M	I	D	N	T	W	.	.	.	.	A	A	G	V	L	F	K	A	L	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L
Query Conservation		.	.																								.	.	.	.
Alig confidence		.	.												.	.											.	.	.	.																																		.
Template Conservation															.	.																																																.
Template Sequence		R	Y	L	H	D	L	R	D	I	C	R	R	Y	.	.	E	V	L	L	I	F	D	E	I	A	T	G	F	G	R	T	G	A	L	F	A	A	D	H	A	G	V	S	P	D	I	M	C	V	G	K	A	L	T	G	G	Y	L	S	L	A	A	.	T	L	C	T	A	D	V	A	H	T	I	S	A	G	A	A	L
Template Known Secondary structure														T	.	.	T								T	T	T	T	T	T	T	T	S	S	S	S	G	G	G	G	T	T				S						G	G	G	G	T	T	S	S					.														S
Template Predicted Secondary structure															.	.																																																.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.		.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	Q	M	V	D	A	D	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.																													.																		.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.																													.																		.	.	.
Template Sequence		M	R	G	P	T	F	M	A	N	P	L	A	C	A	V	S	V	A	S	V	E	L	.	.	.	.	.	.	.	.	.	L	L	G	Q	D	W	R	T	R	I	T	E	L	A	A	G	L	T	A	G	L	D	T	A	R	A	L	P	.	A	V	T	D	V	R	V	C	G	A	I	G	V	I	E	C	D	.	.	.
Template Known Secondary structure			S			T	T	T	T															.	.	.	.	.	.	.	.	.			T	S																		G	G	G	G	G	S	T	.	T								S	S							S	.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.																													.																		.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.										.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R	I	V
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	P	V	D	L	A	V	A	T	P	A	A	L	D	R	G	V	W	L	R	P	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	V	Y	A	M	P	P	Y	I	C	T	P	A	E	I	T	Q	I	T	S	A	M	V	E	V	A
Template Known Secondary structure		S													T	T	T						B	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		381	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.																											.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions