Job Description P06721 Confidence 99.93% Date Wed Jan 25 15:20:11 GMT 2012 Rank 142 Aligned Residues 330 % Identity 11% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.									.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.					.																	.	.	.	.	.	.	.	.																										.
Query SS confidence																		.	.	.	.	.	.	.	.	.					.																	.	.	.	.	.	.	.	.																										.
Query Sequence		E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	.	.	.	.	.	.	.	.	.	Y	G	R	R	.	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	.	.	.	.	.	.	.	.	G	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I	E	Q	.
Query Conservation																		.	.	.	.	.	.	.	.	.					.																	.	.	.	.	.	.	.	.																										.
Alig confidence																		.	.	.	.	.	.	.	.	.					.				.	.	.											.	.	.	.	.	.	.	.																										.
Template Conservation																																			.	.	.
Template Sequence		E	T	Y	K	A	L	G	N	D	N	D	T	G	K	A	N	S	S	A	I	I	S	X	A	N	Y	S	N	P	Q	G	D	S	.	.	.	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E	N	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F
Template Known Secondary structure											S		T	T		S										S				T	T				.	.	.																				G	G	G					S	S													S
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
									101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.			.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.														.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	G	D	H	V	L	M	T	N	T	A	Y	E	P	S	Q	D	F	C	.	.	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	I	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	P	G	S
Query Conservation		.	.	.	.	.	.	.																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																			.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E	A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N
Template Known Secondary structure														S	S	S	S			G	G	G	T	T			S	S	S																T	T																T						T	T									S	S		T
Template Predicted Secondary structure
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																		.																								.	.	.	.	.	.
Query SS confidence																		.																								.	.	.	.	.	.
Query Sequence		I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	.	S	V	V	P	D	A	I	I	M	I	D	N	T	W	A	A	G	V	L	F	K	A	L	.	.	.	.	.	.	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E
Query Conservation																		.																								.	.	.	.	.	.
Alig confidence																		.																								.	.	.	.	.	.															.	.
Template Conservation																																																														.	.
Template Sequence		P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P	F	P	N	I	I	Y	S	D	A	H	L	N	W	D	N	N	T	I	L	C	F	S	L	S	K	I	.	.	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E
Template Known Secondary structure		T	T																			T	T								T	T		T	T	T	T			B		S								T	T							S	G	G	G	.	.	T		G	G	G
Template Predicted Secondary structure																																																														.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.
Template Sequence		A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V	K	L	L	K	Q	A	L	G	D	Y	P	.	.	.	.	.	.	.	L	X	I	H	K	P	E	G	A	I	F	L
Template Known Secondary structure											T	S	S															T	S									T																				S	S	S	S	S	.	.	.	.	.	.	.								B	S	S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.								.	.	.	.	360	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.
Query SS confidence																																																																				.	.
Query Sequence		S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	.	.	E	D	V	D	D	L	I	A	D	L	D	A
Query Conservation																																																																				.	.
Alig confidence								.	.																																					.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation								.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	L	W	F	K	D	.	.	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V	S	D	Y	Q	H	.	.	.	.	.	.	.	.	.	.	.	A	H	E	C	I	R	X	S	I	A	A	D	E	Q	T	L	I	D	G	I	K	V	I	G	E
Template Known Secondary structure						T	T	.	.		S	S												T	T						G	G	G	S		T	T	S			T	T		G	G	.	.	.	.	.	.	.	.	.	.	.	G	G	S						S		S
Template Predicted Secondary structure								.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		368	.	370	.	.	.			.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.												410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	A	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	R	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		435	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions