Job Description P06721 Confidence 99.96% Date Wed Jan 25 15:20:11 GMT 2012 Rank 80 Aligned Residues 343 % Identity 13% Template c3hbxB_ PDB info PDB header:lyase Chain: B: PDB Molecule:glutamate decarboxylase 1; PDBTitle: crystal structure of gad1 from arabidopsis thaliana Resolution 2.67 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70					.	.	.	.	.	.	.	.	.	80								.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure																																																.	.	.	.											.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.											.	.	.	.	.	.	.
Query Sequence		N	S	V	I	Q	R	A	S	S	L	V	F	D	S	V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	H	F	S	L	Q	Q	A	.	.	.	.	M	C	E	L	E	G	G	A	G	C	.	.	.	.	.	.	.	V	L	F	P	C	G	A	A	A	V	A	N	S
Query Conservation																																																.	.	.	.											.	.	.	.	.	.	.
Alig confidence																														.																		.	.	.	.											.	.	.	.	.	.	.
Template Conservation																														.
Template Sequence		N	P	R	L	N	L	A	S	F	V	T	T	W	M	E	P	E	C	D	K	L	I	M	S	S	I	N	K	.	N	Y	V	D	M	D	E	Y	P	V	T	T	E	L	Q	N	R	C	V	N	M	I	A	H	L	F	N	A	P	L	E	E	A	E	T	A	V	G	V	G	T	V	G	S	S	E	A	I	M	L	A
Template Known Secondary structure			G	G	G	B	T	T			S															T	T	T		.	B	T	T		T	T	T																			T	T					T	T									S	S
Template Predicted Secondary structure																														.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		94	.	.														.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Query Sequence		I	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	F	I	E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P	S	Q	D	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	.	.	.	.	.	.	I	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.																			.	.	.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		G	L	A	F	K	R	K	W	Q	N	K	R	K	A	E	G	K	P	V	D	K	P	N	I	V	T	G	A	N	V	Q	V	C	.	.	.	.	W	E	K	F	A	R	Y	F	E	V	E	L	K	E	V	K	L	S	E	G	Y	Y	V	M	D	P	Q	Q	A	V	D	M	V	D	E	N	T	I	C	V	A	A	I
Template Known Secondary structure																T	T				S								T	T					.	.	.	.								T	T									B	T	T	B		S												T	T
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.									.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																									.	.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	S	V	V	.	.	.	.	P	D	A	I	I	M	I	D	N	T	W	A	A	G	V	L	F	.	.	.	.	.	.	.	.	K	A	L	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T
Query Conservation																									.	.	.	.																		.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.																		.	.	.	.	.	.	.	.																			.
Template Conservation																																																																								.
Template Sequence		L	G	S	T	L	N	G	E	F	E	D	V	K	L	L	N	D	L	L	V	E	K	N	K	E	T	G	W	D	T	P	I	H	V	D	A	A	S	G	G	F	I	A	P	F	L	Y	P	E	L	E	W	D	F	R	L	P	L	V	K	S	I	N	V	S	G	H	Y	G	L	.	V	Y	A	G	I	G	W	V	I
Template Known Secondary structure		B	S		T	T	T			B																												T	T	G	G	G	T						S	S				S	T	T	S	T	T													.			S	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	R	N	K	E	D	L	P	E	E	L	I	F	H	I	N	Y	L	G	A	D	Q	P	T	F	T	L	N	F	S	K	G	S	S	Q	V	I	A	Q	Y	Y	Q	L	I	R	L	G	H	E	G	Y	R	N	V	M	E	N	C	R	E	N	M	I	V	L	R	E	G	L	E	K	T	E	R	F	N	I	V	S	K
Template Known Secondary structure			S	S	G	G	G	S		G	G	G						S	S	S	S							S			S		B	S																																						T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	.	.	.	.	G	L	E
Query Conservation																																																																											.	.	.	.
Alig confidence			.	.														.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation			.	.														.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	.	.	E	G	V	P	L	V	A	F	S	L	K	D	S	.	S	C	H	T	E	F	E	I	S	D	M	L	R	R	Y	G	W	I	V	P	A	Y	T	M	P	P	N	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	I	T	V	L	R	V	V	I	R	E	D	F	S	R	T
Template Known Secondary structure		S	.	.	S	S	S	S							S	S		.	S	S												T	T	T		B								T	T		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										T	T
Template Predicted Secondary structure			.	.														.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		370			.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.																			.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	D	D	L	I	A	D	L	D	A	G	F	A	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	E	R	L	V	I	D	I	E	K	V	M	R	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		429	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions