Job Description P06721 Confidence 99.92% Date Wed Jan 25 15:20:11 GMT 2012 Rank 169 Aligned Residues 309 % Identity 12% Template c3ezsB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase aspb; PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution Resolution 2.19 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.									.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.
Predicted Secondary structure																										.																		.	.	.	.	.	.	.	.																						.	.
Query SS confidence																										.																		.	.	.	.	.	.	.	.																						.	.
Query Sequence		F	D	S	V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	.	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	G	.	.	.	.	.	.	.	.	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	.	.	I	E	Q	G	D	H	V
Query Conservation																										.																		.	.	.	.	.	.	.	.																						.	.
Alig confidence																										.				.	.	.												.	.	.	.	.	.	.	.																						.	.
Template Conservation																														.	.	.
Template Sequence		F	E	T	P	K	F	I	Q	D	A	L	K	N	H	T	H	S	L	N	I	Y	P	K	S	A	F	E	E	.	.	.	S	L	R	A	A	Q	R	G	F	F	K	R	R	F	K	I	E	L	K	E	N	E	L	I	S	T	L	G	S	R	E	V	L	F	N	F	P	S	F	V	L	F	D	Y	Q	N	P	T	I
Template Known Secondary structure		S												T	T	G	G	G	G	G	S				T	T				.	.	.															S					G	G	G					S	S	S												T	T	T		S	S
Template Predicted Secondary structure																														.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.				.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.																																								.
Query SS confidence																																	.	.	.	.																																								.
Query Sequence		L	M	T	N	T	A	Y	E	P	S	Q	D	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	.	.	.	.	I	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	.	S	V	V	P	D
Query Conservation																																	.	.	.	.																																								.
Alig confidence											.	.	.	.																			.	.	.	.																																								.
Template Conservation											.	.	.	.
Template Sequence		A	Y	P	N	P	F	Y	Q	I	.	.	.	.	Y	E	G	A	A	K	F	I	K	A	K	S	L	L	X	P	L	T	K	E	N	D	F	T	P	S	L	N	E	K	E	L	Q	E	V	D	L	V	I	L	N	S	P	N	N	P	T	G	R	T	L	S	L	E	E	L	I	S	W	V	K	L	A	L	K	H	D
Template Known Secondary structure						S			T		.	.	.	.								T	T										G	G	G	T	T													S						S	S		T	T	T																			T	T
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.														.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	I	I	M	I	D	N	T	W	A	A	G	V	L	F	K	A	L	D	F	G	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																																.
Template Sequence		F	I	L	I	N	D	E	C	Y	S	E	I	Y	E	N	T	P	P	P	S	L	L	E	A	C	X	L	A	G	N	E	A	F	K	N	V	L	V	I	H	S	L	S	K	R	S	.	S	A	P	G	L	R	S	G	F	I	A	G	D	S	R	L	L	E	K	Y	K	A	F	R	A	Y	L	G	Y	T	S	A	N
Template Known Secondary structure									T	T	T	T		B	S	S	S												T	T		T	T		T	T							S					.	T		G	G	G
Template Predicted Secondary structure																																																.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N
Query Conservation
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	Q	K	A	S	E	A	A	W	L	D	D	R	H	A	E	F	F	R	N	I	Y	A	N	N	L	K	L	A	R	K	I	F	K	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	I	Y	P	Y	S	F	Y	V	Y	L	P	V	Q	N	G	E	N	F	A	K	T
Template Known Secondary structure														S																					S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	B	S	S							S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.																						.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	.	.	E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R
Query Conservation																																																					.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	Y	Q	N	E	G	I	I	T	L	P	A	L	Y	L	G	R	N	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	D	Y	V	R	L	A	L	V	Y	D	T	P	L	L	E	K	P	L	E	I	I	E	T	Y	R	E	N
Template Known Secondary structure									B				G	G	G	G		S	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T								S																		T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.																					.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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