Job Description P06721 Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012 Rank 34 Aligned Residues 334 % Identity 15% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																									.	.																					.	.	.
Query SS confidence																																									.	.																					.	.	.
Query Sequence		V	E	A	K	K	H	A	T	R	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	G	G	.	.	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	.	.	.	I	E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P
Query Conservation																																									.	.																					.	.	.
Alig confidence																																									.	.																					.	.	.
Template Conservation
Template Sequence		V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	A	D	P	G	G	V	V	L	G	A	D	R	A	V	L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A
Template Known Secondary structure											S	S	S		S	S	S																						T			G	G	G					S													T	G	G	G	G	B	T	T							T	T	S		G	G
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.							.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.
Query Sequence		S	Q	D	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	.	.	.	.	.	.	I	G	A	D	I	V	K	H	L	Q	P	N	T	K	I	V	F	L	E	S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	S	V	V	P	D	A	I	I	M	I	D	N	T
Query Conservation																								.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																																										.	.
Template Conservation																																																																							.	.
Template Sequence		N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	P	T	W	Q	W	E	S	L	I	S	K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G	V	T	D	L	R	A	M	T	K	L	V	H	D	V	.	.	G	A	L	V	V	V	D	H	S
Template Known Secondary structure		G	T											B										T	T	T					G	G	G							T	T								S	B		T	T	T		B	B													T	.	.	T								T
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.			.	.	.	190	.	.	.	.	.
		188	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.															.	.	.	250	.	.
Predicted Secondary structure												.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	A	A	G	V	L	F	K	A	L	.	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	A	Y	I	T
Query Conservation												.																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																				.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.
Template Sequence		A	A	A	P	Y	R	L	L	D	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P	I	.	.	.	G	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E
Template Known Secondary structure		T	T	T	T	T											S						G	G	G	G	T	S		S		.	.	.						S							T	S					S		T	T			G	G	G	G	G			S
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	G	L	R	T	L	G	V	R	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S
Query Conservation
Alig confidence																																																				.																												.	.
Template Conservation																																																				.																												.	.
Template Sequence		Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L	R	S	L	P	L	V	M	L	I	G	R	.	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	.	.
Template Known Secondary structure					T	S	S	T	T			S	S																													T		T	T							.		S	S	B		S							T	T	B												T	.	.
Template Predicted Secondary structure																																																				.																												.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	S	M	A	Y	S	W	G	G	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R	I
Query Conservation
Alig confidence		.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	.	.	.	.	.	.	.	.	.	.	.	.	V	G	G	A	V	T	V	G	L	A	H	Y	S	T	M	A	E	V	D	Q	L	V	R	A	L	A	S	L
Template Known Secondary structure		.	.	T								S								T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	T	T									T	T															T
Template Predicted Secondary structure		.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.													370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions