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Job DescriptionP06721
Confidence100.00%DateWed Jan 25 15:20:11 GMT 2012
Rank12Aligned Residues380
% Identity29%Templatec3aemD_
PDB info PDB header:lyaseChain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.........50.........60.........70.........80....
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Query Sequence  KLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFP
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Template Sequence  DITTTLLHPK. . GDHVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEG. HIYSRLGNPTVEQFEEMVCSIEGAAGSAAFG
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   1505....1510.... .....1520.........1530.........1540.........1550 .........1560.........1570.........1580.
 
   85....90.........100.........110.........120.........130.........140.........150.........160....
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Query Sequence  CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSITMEVH
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Template Sequence  SGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPNTKMVYLESPANPTCKVS
Template Known Secondary structure  STTT

TT
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   1582.......1590.........1600.........1610.........1620.........1630.........1640.........1650.........1660.
 
   165....170.........180.........190.........200.........210.........220...... ...230.........240...
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Query Sequence  DVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCN. ARCWEQLRENAYLMGQM
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Template Sequence  DIKGIAVVCHER. . GARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL
Template Known Secondary structure 
..T

TTT
TTT

GGGGT
STTTTTT
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   1662.......1670... ......1680.........1690.........1700.........1710.........1720.........1730.........
 
   244.....250.........260.........270.........280.........290.........300.........310.........320...
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Query Sequence  VDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEE
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Template Sequence  MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMK. . . SFEA
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TTT
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   1740.........1750.........1760.........1770.........1780.........1790.........1800.........1810.. ....
 
   324.....330.........340.........350.........360. ........370.........380.........390..
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Query Sequence  LANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQ. . GEIDFSGTLIRLHIGLEDVDDLIADLDAGFA
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Template Sequence  AKKLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALE
Template Known Secondary structure  TS
SSS
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SS

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   1817..1820.........1830.........1840.........1850.........1860.........1870.........1880.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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