Return to main results Retrieve Phyre Job Id

Job DescriptionP06721
Confidence99.94%DateWed Jan 25 15:20:11 GMT 2012
Rank115Aligned Residues295
% Identity13%Templatec2x3lA_
PDB info PDB header:lyaseChain: A: PDB Molecule:orn/lys/arg decarboxylase family protein; PDBTitle: crystal structure of the orn_lys_arg decarboxylase family2 protein sar0482 from methicillin-resistant staphylococcus3 aureus
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   50.........60.........70.........80.........90.........100.........110.........120.........
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  ANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTT
Query Conservation        
 
   

   

  

 
 
    
   

  
   

 


  

 

                    

  
Alig confidence 




































































....






Template Conservation 
    
 
      
 
     
         
 



    
   
    

 

     
 
     .... 
 
   
Template Sequence  EIPGLDDLHHPEEVILKSMKQVEKHSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHAL. . . . DISQQEG
Template Known Secondary structure  S
TTS

TTS
SS
S
TTSSTTTTSSS

TT

....T

Template Predicted Secondary structure 























....


Template SS confidence 















































































   45....50.........60.........70.........80.........90.........100.........110... ......120
 
   130..... ....140.........150.........160.........170.........180.........190....... ..200...
Predicted Secondary structure 



.


































.....




Query SS confidence 





.





























































. . . . .





Query Sequence  SWFDPL. IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL. . . . . DFGIDV
Query Conservation     
  .
   
       
  
      
  
    
  
   
     
  



 
   
      .....  
 
 
Alig confidence 





.




















.


















..


















.....





Template Conservation 
                   
 
 
  
.
  
       
       ..   







        
      



Template Sequence  HFIETHQSPLTNHYNKVNLHKLVVLTYP. NYYGETFNVEEVIKSLHQL. . NIPVLIDEAHGAHFGLQGFPDSTLNYQADY
Template Known Secondary structure 

TTTSS


SS.
TTS



T..T


TT
TTTTSTTS


GGGGT
S
Template Predicted Secondary structure 













.





..




















Template SS confidence 















































































   121........130.........140........ .150.........160....... ..170.........180.........190.......
 
   204.....210.........220.........230.........240.........250.........260.........270.........280...
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  SIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQV
Query Conservation     
 

   
     

 
         
       
       
      
  
  
       
  

         
Alig confidence 






.









































....

























Template Conservation 

 
 

.
 

 
 
 
 
         
        




    


....  
                  
   
Template Sequence  VVQSFHT. LPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASL. . . . ESAAQFYKTYDSTLFFAKRAQLIECL
Template Known Secondary structure 



.
SS
TT
TT
TTS
SS

....


Template Predicted Secondary structure 

.
















....
Template SS confidence 















































































   205....210. ........220.........230.........240.........250... ......260.........270.........
 
   284.....290.........300.........310.........320.........330.........340.........350.........360...
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  ARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGE
Query Conservation    
    
   
   
            

 
               
    
  
 
   

                 
Alig confidence 










............























....












................
Template Conservation     
   
   ............    
 
   
  
 

   
 
 ....

 

      

................
Template Sequence  ENKGFEMLQVD. . . . . . . . . . . . DPLKLLIKYEGFTGHDIQNWFMNA. . . . HIYLELADDYQAL. . . . . . . . . . . . . . . .
Template Known Secondary structure  T

S............STT
TTS
T....TS
SS
................
Template Predicted Secondary structure 






............







....




................
Template SS confidence 















































































   281........290. ........300.........310..... ....320........
 
   364.....370.........380.........390.....
Predicted Secondary structure 









Query SS confidence 































Query Sequence  IDFSGTLIRLHIGLEDVDDLIADLDAGFARIV
Query Conservation   

    



 


   


 

  

  
 
Alig confidence  .......
























Template Conservation  .......                
        
Template Sequence  . . . . . . . AILPLWHHDDTYLFDSLLRKIEDMI
Template Known Secondary structure  .......




TT



T

Template Predicted Secondary structure  .......






Template SS confidence 































   329330.........340.........350...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions