Phyre 2 alignment of P06721 with c2w8wA

Job Description P06721
Confidence 100.00% Date Wed Jan 25 15:20:11 GMT 2012

Rank 41 Aligned Residues 312

% Identity 19% Template c2w8wA_

PDB info PDB header:transferase Chain: A: PDB Molecule:serine palmitoyltransferase; PDBTitle: n100y spt with plp-ser

Resolution 2.14 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	39	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence	V	E	A	K	K	H	A	T	R	.	.	N	R	A	N	G	E	L	F	Y	G	R	R	G	T	L	T	H	F	S	L	Q	Q	A	M	C	E	L	E	G	G	A	G	C	V	L	F	P	C	G	A	A	A	V	A	N	S	I	L	A	F	I	E	Q	G	D	H	V	L	M	T	N	T	A	Y	E	P	S	Q	D
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence	I	A	A	G	K	E	A	L	E	K	F	G	S	G	T	Y	G	S	R	M	L	N	G	T	F	H	D	H	M	E	V	E	Q	A	L	R	D	F	Y	G	T	T	G	A	I	V	F	S	T	G	Y	M	A	N	L	G	I	I	S	T	L	A	G	K	G	E	Y	V	I	L	D	A	D	S	H	A	S	I	Y	D
Template Known Secondary structure													S				S	B	T	T	T	T	T																	T		S						S														S		T	T							T	T
Template Predicted Secondary structure
Template SS confidence
	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

	117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence	F	C	S	K	I	L	S	K	L	G	V	T	T	S	W	F	D	P	L	I	G	A	D	I	V	K	H	L	.	.	.	.	Q	P	N	T	K	I	V	F	L	E	S	P	G	S	I	T	M	E	V	H	D	V	P	A	I	V	A	A	V	R	S	V	V	P	D	A	I	I	M	I	D	N	T	W	A	A	G	V
Query Conservation																													.	.	.	.
Alig confidence			.	.	.	.																							.	.	.	.																																	.	.
Template Conservation			.	.	.	.																																																											.	.
Template Sequence	G	C	.	.	.	.	Q	Q	G	N	A	E	I	V	R	F	R	H	N	S	V	E	D	L	D	K	R	L	G	R	L	P	K	E	P	A	K	L	V	V	L	E	G	V	Y	S	M	L	G	D	I	A	P	L	K	E	M	V	A	V	A	K	K	H	.	.	G	A	M	V	L	V	D	E	A	H	S	M	G	F
Template Known Secondary structure			.	.	.	.			S		S							T	T												S		S	S	S								S			T	T	T	T															T	.	.	T								T	T	T	T	T	T
Template Predicted Secondary structure			.	.	.	.																																																											.	.
Template SS confidence
	165	.					.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.

	193	.	.	.	.						.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.						.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure						.	.	.	.	.																																																			.	.	.	.	.
Query SS confidence						.	.	.	.	.																																																			.	.	.	.	.
Query Sequence	L	F	K	A	L	.	.	.	.	.	D	F	G	I	D	V	S	I	Q	A	A	T	K	Y	L	V	G	H	S	D	A	M	I	G	T	A	V	C	N	A	R	C	W	E	Q	L	R	E	N	A	Y	L	M	G	Q	M	V	D	A	D	.	.	.	.	.	T	A	Y	I	T	S	R	G	L	R	T	L	G	V	R
Query Conservation						.	.	.	.	.																																																			.	.	.	.	.
Alig confidence						.	.	.	.	.																																																			.	.	.	.	.
Template Conservation
Template Sequence	F	G	P	N	G	R	G	V	Y	E	A	Q	G	L	E	G	Q	I	D	F	V	V	G	T	F	S	K	S	V	G	T	V	G	G	F	V	V	S	N	H	P	K	F	E	A	V	R	L	A	C	R	P	Y	I	F	T	A	S	L	P	P	S	V	V	A	T	A	T	T	S	I	R	K	L	M	T	A	H	E	K
Template Known Secondary structure	S	S	T	T	S							T	T		T	T	T		S						S	T	T	T	T		S	S									T	T	G	G	G										T	S	B																		T	T
Template Predicted Secondary structure
Template SS confidence
	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

	263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	R	Q	H	H	E	S	S	L	K	V	A	E	W	L	A	E	H	P	Q	V	A	R	V	N	H	P	A	L	P	G	S	K	G	H	E	F	W	K	R	D	F	T	G	S	S	G	L	F	S	F	V	L	K	K	K	L	N	N	E	E	L	A	N	Y	L	D	N	F	S	L	F	S	M	A	Y	S	W	G	G
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence	R	E	R	L	W	S	N	A	R	A	L	H	G	G	L	K	A	M	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	G	T	E	T	C	D	S	A	I	V	A	V	M	L	E	.	.	.	D	Q	E	Q	A	A	M	M	W	Q	A	L	L	D	G	G	L	Y	V	N	M	A	R
Template Known Secondary structure																		T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S		S	S			S	S							S	.	.	.	S														T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
	319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.																		.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.				.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

	343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	E	S	L	I	L	A	N	Q	P	E	H	I	A	A	I	R	P	Q	G	E	I	D	F	S	G	T	L	I	R	L	H	I	G	L	E	D	V	D	D	L	I	A	D	L	D	A	G	F	A	R	I
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	P	A	T	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	F	L	L	R	C	S	I	C	A	E	H	T	P	A	Q	I	Q	T	V	L	G	M	F	Q	A	A
Template Known Secondary structure	T	T	T	S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	379	380	.	.	.	.																			.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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