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Job DescriptionP06721
Confidence99.92%DateWed Jan 25 15:20:11 GMT 2012
Rank172Aligned Residues333
% Identity13%Templatec2okkA_
PDB info PDB header:lyaseChain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65)
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.........70 ........ .80.........90......
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Query Sequence  VIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQA. . . . MCELEGGA. . . . GCVLFPCGAAAVANSILA. .
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Template Sequence  PRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMREIIGWPGGSGDGIFSPGGAISNMYAMMIAR
Template Known Secondary structure  TTSSSS






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   176...180.........190.........200.........210.........220.........230.........240.........250.....
 
   97..100.........110.........120....... ..130..... ....140........ .150
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Query Sequence  . . . . . . . . . . . . FIEQGDHVLMTNTAYEPSQDFCSKILSKLGV. . . TTSWFDPL. . . . . IGADIVKHLQPNT. . . . . . KI
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Template Sequence  FKMFPEVKEKGMAALPRLIAFTSEHSHFS. . . . LKKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEAKQKGFVPFL
Template Known Secondary structure 
TT
GGGS

TTS
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B
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TT
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   256...260.........270.........280.... .....290.........300.........310.........320.........330.
 
   151........160.........170.........180.........190.........200 .........210.........220...
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Query Sequence  VFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFG. . . . . . . IDVSIQAATKYLVGHSDAMIGTA
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Template Sequence  VSATAGTTVYGAFDPLLAVADICKKY. . KIWMHVDAAWGGGLLMSRKHKWKLSGVERANSVTWNPHMMGVPLQC. . SALL
Template Known Secondary structure  BS
TTT

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TTGGGGGG
TTTGGGGTTGGG
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   332.......340.........350....... ..360.........370.........380.........390.........400... ....
 
   224.....230.........240.........250.........260.........270.........280.........290.........300...
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Query Sequence  VCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRD
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Template Sequence  VREEGLMQNCNQMHDLSY. . DTGDKALQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKNREGYEMVFDG
Template Known Secondary structure  SSTT



GGG..

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   409410.........420...... ...430.........440.........450.........460.........470.........480......
 
   304.....310......... 320.........330.........340.........350.........360.........
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Query Sequence  FTGSSGLFSFVLKKKL. . . . . . . . . . . . . . NNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGT
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Template Sequence  KP. QHTNVCFWYIPPSLRTLEERMSRLSKVAPVIKARMMEYGTTMVSYQPLGD. . . . . . . . . . . . . . . . . . . . . . . . KVN
Template Known Secondary structure 

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TTTTT



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   498. 500.........510.........520.........530.........540......... 550..
 
   370...... ...380.........390....
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Query Sequence  LIRLHIG. LEDVDDLIADLDAGFARI
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Template Sequence  FFRMVISNPAATHQDIDFLIEEIERL
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TT

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   556...560.........570.........580.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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